Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0295
(674 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 103 3e-22
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 95 1e-19
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 91 1e-18
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 91 1e-18
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 91 1e-18
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 91 1e-18
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 89 4e-18
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 89 5e-18
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 89 7e-18
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 87 2e-17
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 87 3e-17
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 87 3e-17
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 87 3e-17
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 87 3e-17
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 80 2e-15
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 79 5e-15
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 76 5e-14
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 76 5e-14
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 76 5e-14
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 69 8e-12
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 64 1e-10
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 57 2e-08
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 54 1e-07
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 44 1e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 39 0.007
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA... 31 1.9
U15220-1|AAA61796.1| 1051|Drosophila melanogaster gp150 protein ... 30 3.3
BT015195-1|AAT94424.1| 1076|Drosophila melanogaster RE72245p pro... 30 3.3
BT011025-1|AAR30185.1| 1051|Drosophila melanogaster RE46351p pro... 30 3.3
AY029705-1|AAK39644.1| 1051|Drosophila melanogaster leucine rich... 30 3.3
AE013599-3379|AAG22195.1| 1051|Drosophila melanogaster CG5820-PC... 30 3.3
AE013599-3378|AAM68222.1| 1051|Drosophila melanogaster CG5820-PB... 30 3.3
AE013599-3377|AAF46831.1| 1051|Drosophila melanogaster CG5820-PA... 30 3.3
AE013599-3376|AAM68221.1| 1076|Drosophila melanogaster CG5820-PD... 30 3.3
U78177-1|AAB36950.1| 528|Drosophila melanogaster Klingon protein. 29 7.7
AY060363-1|AAL25402.1| 545|Drosophila melanogaster LD10776p pro... 29 7.7
AE014297-3243|AAF56071.1| 545|Drosophila melanogaster CG6669-PA... 29 7.7
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 103 bits (246), Expect = 3e-22
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 3/219 (1%)
Frame = +3
Query: 27 RAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLAR 206
R + +IR+ D + +R+ + +++ + E+R + L + + + Y L +
Sbjct: 310 RLRRRAIRSQDPW----DRLLWNRAAKQLRNVLRELRSNFFEQKLASMDYTVDAGYSLWK 365
Query: 207 TLKS--DTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDS- 377
KS P+ P G LA +++E+A A+ L+T+ T + + E +DS
Sbjct: 366 CTKSLKRQPFRQVPIRCPGGELAK-NEEEQANCFANHLETRFTHFQFATTEQYQETLDSL 424
Query: 378 EVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIF 557
E + SLP + P+ E+ + IK L +K+PG D + N +K LPV+ I+ LA I+
Sbjct: 425 ETPLQMSLP----IKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIY 480
Query: 558 NAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
NA + FP WK A ++ IHKPGKP+ P SYRPISL
Sbjct: 481 NAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISL 519
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 94.7 bits (225), Expect = 1e-19
Identities = 67/183 (36%), Positives = 91/183 (49%), Gaps = 3/183 (1%)
Frame = +3
Query: 135 RDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPP--LVGPSGRLAAFDDDEKAELLAD 308
+ A+ FL+ L + Y L R K P + PSG EK E+ A+
Sbjct: 145 KQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCR-TSLEKTEVFAN 203
Query: 309 TLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPG 485
L+ + TP + + + ++ + E + SLPPS VT EVK+LI L +KAPG
Sbjct: 204 NLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPPS----AVTLEEVKNLIAKLPLKKAPG 259
Query: 486 SDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRP 665
D + NR I+LLP Q + L IFN+ + FP WK A +I IHK GK SYRP
Sbjct: 260 EDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRP 319
Query: 666 ISL 674
ISL
Sbjct: 320 ISL 322
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 91.5 bits (217), Expect = 1e-18
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Frame = +3
Query: 111 VKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK 290
++ + +A+W++ L+ L + ++ + + +K + P + + + A EK
Sbjct: 358 IRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIV--PCLSKADEIYA-SGKEK 414
Query: 291 AELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-LPPVTPMEVKDLIKDLR 467
A +LAD Q + + + ++ V ++ A P + A + VT EV ++K L
Sbjct: 415 ANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALH 474
Query: 468 PRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 647
RK+PG DGI N +K LP I + +I N + FP WK A ++ I KPGKP ++
Sbjct: 475 TRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDN 534
Query: 648 PTSYRPISL 674
P SYRPISL
Sbjct: 535 PESYRPISL 543
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 91.5 bits (217), Expect = 1e-18
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Frame = +3
Query: 111 VKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK 290
++ + +A+W++ L+ L + ++ + + +K + P + + + A EK
Sbjct: 306 IRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIV--PCLSKADEIYA-SGKEK 362
Query: 291 AELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-LPPVTPMEVKDLIKDLR 467
A +LAD Q + + + ++ V ++ A P + A + VT EV ++K L
Sbjct: 363 ANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALH 422
Query: 468 PRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 647
RK+PG DGI N +K LP I + +I N + FP WK A ++ I KPGKP ++
Sbjct: 423 TRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDN 482
Query: 648 PTSYRPISL 674
P SYRPISL
Sbjct: 483 PESYRPISL 491
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 91.1 bits (216), Expect = 1e-18
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 3/209 (1%)
Frame = +3
Query: 57 DRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSY--YRLARTLKSDTVV 230
+R P ++ +++ A +R + E ++++ S ++E L+P+ Y +R R LK+
Sbjct: 317 NRSPITKHMLKI-ATRRLTNALKQEEKNSQRS-YIEQLSPTSTKYPLWRAHRNLKTPIAP 374
Query: 231 TMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPS 410
MP L PSG D+E+A AD LQ P+ + + L+ A+L P
Sbjct: 375 IMP-LRSPSGTWFR-SDEERASAFADHLQNVFRPNPSTNTFILPPLI------AANLDPQ 426
Query: 411 DALPPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 587
+ P E+ +IK+ L PRK+PG D I+ R++ LP I+ + +FNA FP
Sbjct: 427 EPFE-FRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFP 485
Query: 588 AVWKEADVIGIHKPGKPKNHPTSYRPISL 674
WK++ ++ I KPGK K P+SYRPISL
Sbjct: 486 QKWKKSTIVMIPKPGKDKTQPSSYRPISL 514
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 91.1 bits (216), Expect = 1e-18
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 3/183 (1%)
Frame = +3
Query: 135 RDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPP--LVGPSGRLAAFDDDEKAELLAD 308
+ A+ FL+ L + Y L R K P + PSG EK E+ A+
Sbjct: 343 KQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCR-TSLEKTEVFAN 401
Query: 309 TLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPG 485
L+ + TP + + + ++ + E + SLP L VT EVK+LI L +KAPG
Sbjct: 402 NLEQRFTPYNYAPESLCRQVEEYLESPFQMSLP----LSAVTLEEVKNLIAKLPLKKAPG 457
Query: 486 SDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRP 665
D + NR I+LLP Q + LA IFN+ + FP WK A +I IHK GK SYRP
Sbjct: 458 EDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRP 517
Query: 666 ISL 674
SL
Sbjct: 518 TSL 520
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 89.4 bits (212), Expect = 4e-18
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 3/209 (1%)
Frame = +3
Query: 57 DRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSY--YRLARTLKSDTVV 230
+R P ++ +++ A +R + E ++++ S ++E L+P+ Y +R R LK+
Sbjct: 317 NRSPITKHMLKI-ATRRLTNALKQEEKNSQRS-YIEQLSPTSTKYPLWRAHRNLKTPIAP 374
Query: 231 TMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPS 410
MP L PSG D+E+A AD LQ P+ + + L+ A+L P
Sbjct: 375 IMP-LRSPSGTWFR-SDEERACAFADHLQNVFRPNPSTNTFILPPLI------AANLDPQ 426
Query: 411 DALPPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 587
+ P E+ +IK+ L PRK+PG D I+ R++ LP I+ + +FNA FP
Sbjct: 427 EPFE-FRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFP 485
Query: 588 AVWKEADVIGIHKPGKPKNHPTSYRPISL 674
WK++ ++ I KPGK K P+SYRPISL
Sbjct: 486 QKWKKSTIVMIPKPGKDKTQPSSYRPISL 514
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 89.0 bits (211), Expect = 5e-18
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + E++ +++A + +K I +R+ R ++ +EG+ S R
Sbjct: 335 LEEKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRKM 394
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVEL 368
++L K P L G E E L+ + P+ +V H++
Sbjct: 395 WKLLDEGKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKPNN-NVPDYHIDR 453
Query: 369 V--------DSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLP 524
V +S + R +L + P+T E+ D IK+L+ KAPG D I+N++IK LP
Sbjct: 454 VNTGLRIIKESMLTERHNLNKNPHNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLP 513
Query: 525 VQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 514 TKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISL 563
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 88.6 bits (210), Expect = 7e-18
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + T E++ +++A + +K I +R+ R ++ +EG+ + R
Sbjct: 347 LEEKRIQSRIFKATRTNEDKTKLKAAENRLKKVIKILREKRINEQIEGIDTNNPDRMRKI 406
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVEL 368
+RL K P L G E E L+ + P+ + V H++
Sbjct: 407 WRLLSEGKKMNQPNFPLKLETKKGPKWTKTIKETTEAFVSHLEGRFKPN-KIVPDYHIDK 465
Query: 369 V--------DSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLP 524
V +S + R +L + P+T E+ + IK+L+ KAPG D I+N++IK LP
Sbjct: 466 VNTGLRIIKESMLTERHNLNKNPHNQPITLNELNEEIKNLKNSKAPGKDLITNQLIKTLP 525
Query: 525 VQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 526 TKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISL 575
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 87.0 bits (206), Expect = 2e-17
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + T E++ +++A + +K + +R+ R + +EG+ R
Sbjct: 335 LEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKM 394
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQ----SVDPV 356
+RL K P L G E E L+ + P+ ++PV
Sbjct: 395 WRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNNNVPDYHINPV 454
Query: 357 HVEL---VDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPV 527
+ L +S + R + + P+T E+ D IK+L+ KAPG D I+N++IK LP
Sbjct: 455 NSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKALPT 514
Query: 528 QLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 515 KATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 563
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 86.6 bits (205), Expect = 3e-17
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + T E++ +++A + +K + +R+ R + +EG+ R
Sbjct: 219 LEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKM 278
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVEL 368
+RL K P L G E E L+ + P+ +V H+
Sbjct: 279 WRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINT 337
Query: 369 VDSEVE--------RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLP 524
V+S + R + + P+T E+ D IK+L+ KAPG D I+N++IK LP
Sbjct: 338 VNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLP 397
Query: 525 VQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 398 TKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 447
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 86.6 bits (205), Expect = 3e-17
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + T E++ +++A + +K + +R+ R + +EG+ R
Sbjct: 335 LEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKM 394
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVEL 368
+RL K P L G E E L+ + P+ +V H+
Sbjct: 395 WRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINT 453
Query: 369 VDSEVE--------RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLP 524
V+S + R + + P+T E+ D IK+L+ KAPG D I+N++IK LP
Sbjct: 454 VNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLP 513
Query: 525 VQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 514 TKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 563
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 86.6 bits (205), Expect = 3e-17
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + T E++ +++A + +K + +R+ R + +EG+ R
Sbjct: 297 LEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKM 356
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVEL 368
+RL K P L G E E L+ + P+ +V H+
Sbjct: 357 WRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINT 415
Query: 369 VDSEVE--------RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLP 524
V+S + R + + P+T E+ D IK+L+ KAPG D I+N++IK LP
Sbjct: 416 VNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLP 475
Query: 525 VQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 476 TKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 525
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 86.6 bits (205), Expect = 3e-17
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Frame = +3
Query: 24 LRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQ----RSY 191
L K R + T E++ +++A + +K + +R+ R + +EG+ R
Sbjct: 335 LEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKM 394
Query: 192 YRLARTLKSDTVVTMP-PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVEL 368
+RL K P L G E E L+ + P+ +V H+
Sbjct: 395 WRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNN-NVPDYHINT 453
Query: 369 VDSEVE--------RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLP 524
V+S + R + + P+T E+ D IK+L+ KAPG D I+N++IK LP
Sbjct: 454 VNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLP 513
Query: 525 VQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N+ + +P WK A V I KPGK N P SYRPISL
Sbjct: 514 TKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 563
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 80.2 bits (189), Expect = 2e-15
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 4/209 (1%)
Frame = +3
Query: 60 RYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPS---QRSYYRLARTLKSDTVV 230
R PTA+ ++++ R + + + + D ++E L P+ Q+S +R TL+ T
Sbjct: 319 RSPTAKQKLKVAT--RKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTE- 375
Query: 231 TMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPS 410
T+ P+ SG A D+D +A A LQ TP+ + L V R P
Sbjct: 376 TVLPIKNSSGGWARSDED-RANTFAAHLQNVFTPNQATST---FALPSYPVNRHQQHTPI 431
Query: 411 DALPPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 587
P E+ +IKD L P+K+PG D I+ +I LP + + +FNA FP
Sbjct: 432 ----VFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFP 487
Query: 588 AVWKEADVIGIHKPGKPKNHPTSYRPISL 674
WK +I I KPGK +SYRPISL
Sbjct: 488 QRWKMMKIIMIPKPGKNHTVASSYRPISL 516
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 79.0 bits (186), Expect = 5e-15
Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +3
Query: 186 SYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTP-STQSVDPVHV 362
S ++ R +K PLV +G D + AE+ A L + P S+ V
Sbjct: 361 SLWKATRAIKR-RCTRKAPLVDSNGTWCRTDLGQ-AEVFAAHLAERFQPFKLASLQQVE- 417
Query: 363 ELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVM 542
+++ + +L + P P EV ++I KAPG D I N +K LP Q I+
Sbjct: 418 ---ETQDQLNQALQMDMPITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILY 474
Query: 543 LASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ +FNA + FP WK + IHKPGKP+ P SYRPISL
Sbjct: 475 ITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISL 518
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.8 bits (178), Expect = 5e-14
Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Frame = +3
Query: 282 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-----LPPVTPMEVK 446
DEKAE A L+++ + Q D E V +E+ + SL S PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 447 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 626
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 627 PGKPKNHPTSYRPISL 674
PGK SYRPISL
Sbjct: 551 PGKSPFALNSYRPISL 566
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.8 bits (178), Expect = 5e-14
Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Frame = +3
Query: 282 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-----LPPVTPMEVK 446
DEKAE A L+++ + Q D E V +E+ + SL S PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 447 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 626
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 627 PGKPKNHPTSYRPISL 674
PGK SYRPISL
Sbjct: 551 PGKSPFALNSYRPISL 566
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.8 bits (178), Expect = 5e-14
Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Frame = +3
Query: 282 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDA-----LPPVTPMEVK 446
DEKAE A L+++ + Q D E V +E+ + SL S PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 447 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 626
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 627 PGKPKNHPTSYRPISL 674
PGK SYRPISL
Sbjct: 551 PGKSPFALNSYRPISL 566
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 68.5 bits (160), Expect = 8e-12
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Frame = +3
Query: 363 ELVDSEVERRASLPPSDA-----LPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPV 527
E V +E+++ SL S PVT E+ LI L +KAPG+D ++N+ I LP
Sbjct: 11 EFVRNELDKFKSLNASGESGNSNFKPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPT 70
Query: 528 QLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
+ + L I+N + FP WK A + I KPGK SYRPISL
Sbjct: 71 KARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISL 119
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 64.5 bits (150), Expect = 1e-10
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = +3
Query: 402 PPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCI 581
PP+ P +T EV + K +RP KAPG DGI ++K + F + + +
Sbjct: 394 PPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGV 453
Query: 582 FPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
FP WK+ ++ + K P N P SYRP+ L
Sbjct: 454 FPKRWKKMKLVLLLKGKGPANVPRSYRPLCL 484
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 57.2 bits (132), Expect = 2e-08
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +3
Query: 429 TPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 608
T +E+++ + + K+PG+D +S ++K L L L IFN + +P W+ A
Sbjct: 438 TLLEIENSVAKAKG-KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI 496
Query: 609 VIGIHKPGKPKNHPTSYRPISL 674
+I I KP KP + SYRPISL
Sbjct: 497 IIPISKPNKPPSDINSYRPISL 518
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 54.4 bits (125), Expect = 1e-07
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +3
Query: 384 ERRASLPPSDALPPVTPM-EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFN 560
E A ++ +PP + EV + L+ R++PG DGI+ + K + + LAS+F+
Sbjct: 419 ESEAPTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFS 478
Query: 561 AAMANCIFPAVWKEADVIGIHK-PGKPKNHPTSYRPISL 674
+ FPA WK V+ + K P K K P+SYR I L
Sbjct: 479 RCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICL 517
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 519 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
LP+ ++ + +FNA FP WK++ +I I KP K K P SYRPISL
Sbjct: 5 LPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQP-SYRPISL 55
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 38.7 bits (86), Expect = 0.007
Identities = 27/83 (32%), Positives = 42/83 (50%)
Frame = +3
Query: 426 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 605
+T +E+ ++ L+ APG + IS ++IK + +FN N P +K +
Sbjct: 433 ITYLELSSALQTLKGC-APGLNRISYQMIKNSSHTTKNRITKLFNEIF-NSHIPQAYKTS 490
Query: 606 DVIGIHKPGKPKNHPTSYRPISL 674
+I I KP K +SYRPISL
Sbjct: 491 LIIPILKPNTDKTKTSSYRPISL 513
>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
protein.
Length = 2284
Score = 30.7 bits (66), Expect = 1.9
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 238 PPS*APQADSRRSMMTKKQSCWPIHCKPSARPALNPWTLFM*N**TVR*NAEPPCHPLMR 417
P + PQ R S+ TK+ C+P P +P P T+ + + +P C P
Sbjct: 478 PATYVPQTTRRPSITTKRPRCYPGSTDPECQPRTRP-TITTSQPRCSQGSTDPECQPATY 536
Query: 418 YHPSPR 435
P+ R
Sbjct: 537 LPPTTR 542
>U15220-1|AAA61796.1| 1051|Drosophila melanogaster gp150 protein
protein.
Length = 1051
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>BT015195-1|AAT94424.1| 1076|Drosophila melanogaster RE72245p
protein.
Length = 1076
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 37 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 92
>BT011025-1|AAR30185.1| 1051|Drosophila melanogaster RE46351p
protein.
Length = 1051
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AY029705-1|AAK39644.1| 1051|Drosophila melanogaster leucine rich
repeat protein GP150 protein.
Length = 1051
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3379|AAG22195.1| 1051|Drosophila melanogaster CG5820-PC,
isoform C protein.
Length = 1051
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3378|AAM68222.1| 1051|Drosophila melanogaster CG5820-PB,
isoform B protein.
Length = 1051
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3377|AAF46831.1| 1051|Drosophila melanogaster CG5820-PA,
isoform A protein.
Length = 1051
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 12 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 67
>AE013599-3376|AAM68221.1| 1076|Drosophila melanogaster CG5820-PD,
isoform D protein.
Length = 1076
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 297 LLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPSDALPPVTPMEVKDL 452
LLA TL + +V P +H +L ++E+ + P+++LP ++ +VKDL
Sbjct: 37 LLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEVSPTESLPKISTPKVKDL 92
>U78177-1|AAB36950.1| 528|Drosophila melanogaster Klingon protein.
Length = 528
Score = 28.7 bits (61), Expect = 7.7
Identities = 29/114 (25%), Positives = 44/114 (38%)
Frame = +3
Query: 57 DRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTM 236
D YP E +R L R V+ T + RW DF+ L P R + S T+ +
Sbjct: 400 DSYPPLEE---VRLLYRRVQMNETYQQPGRWHDFI--LTPEHRPASEPLTHIMSYTIKNL 454
Query: 237 PPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRAS 398
P G + + ++D Q ++Q + P E+V S R S
Sbjct: 455 HP-GGYYEAIVQAKNRYGWNEVSDIFQFVVATNSQDIGPEDAEVVASSKSRSNS 507
>AY060363-1|AAL25402.1| 545|Drosophila melanogaster LD10776p
protein.
Length = 545
Score = 28.7 bits (61), Expect = 7.7
Identities = 29/114 (25%), Positives = 44/114 (38%)
Frame = +3
Query: 57 DRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTM 236
D YP E +R L R V+ T + RW DF+ L P R + S T+ +
Sbjct: 403 DSYPPLEE---VRLLYRRVQMNETYQQPGRWHDFI--LTPEHRPASEPLTHIMSYTIKNL 457
Query: 237 PPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRAS 398
P G + + ++D Q ++Q + P E+V S R S
Sbjct: 458 HP-GGYYEAIVQAKNRYGWNEVSDIFQFVVATNSQDIGPEDAEVVASSKSRSNS 510
>AE014297-3243|AAF56071.1| 545|Drosophila melanogaster CG6669-PA
protein.
Length = 545
Score = 28.7 bits (61), Expect = 7.7
Identities = 29/114 (25%), Positives = 44/114 (38%)
Frame = +3
Query: 57 DRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTM 236
D YP E +R L R V+ T + RW DF+ L P R + S T+ +
Sbjct: 403 DSYPPLEE---VRLLYRRVQMNETYQQPGRWHDFI--LTPEHRPASEPLTHIMSYTIKNL 457
Query: 237 PPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRAS 398
P G + + ++D Q ++Q + P E+V S R S
Sbjct: 458 HP-GGYYEAIVQAKNRYGWNEVSDIFQFVVATNSQDIGPEDAEVVASSKSRSNS 510
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,220,510
Number of Sequences: 53049
Number of extensions: 697460
Number of successful extensions: 2177
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2173
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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