Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0295
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 59 2e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 50 2e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 50 2e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 33 0.25
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 28 7.0
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 28 7.0
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 28 7.0
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 426 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 605
+T +E+ ++ + P A G DGI+ I+ LP+ LA ++N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 606 DVIGIHKPGKPKNHPTSYRPISL 674
+VI I KP K +SYRPISL
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISL 410
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 339 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 512
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575
Query: 513 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
K +I ++ FN + + P WK + I K G +N +YRPI L
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICL 628
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 339 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 512
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314
Query: 513 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
K +I ++ FN + + P WK + I K G +N +YRPI L
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICL 367
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +3
Query: 339 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 512
Q ++ + E S V + +S+P + PP P +++ ++ KA G D IS +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404
Query: 513 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISL 674
K +I ++ FN + + P WK + I K G +N +YRPI L
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICL 457
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 402 PP--SDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMAN 575
PP ++ LPP E++ I KA GSD I+ +K +I ++ FN + +
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445
Query: 576 CIFPAVWKEADVIGIHKPG 632
P WK + I K G
Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
protein C41A3.1 protein.
Length = 7829
Score = 31.5 bits (68), Expect = 0.57
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +3
Query: 243 LVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPS 410
+V P+GRLAAFD + A++ S Q + +H E V S P
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261
Query: 411 DALPPVTPMEVK 446
A P++ EV+
Sbjct: 262 TAPNPISQYEVQ 273
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 276 DDDEKAELLADTLQTQCTP---STQSVDPVHVELVDSEVERRASLPPSDALPP 425
D+DE AE +A +P S++S P + VD +E + PP PP
Sbjct: 431 DEDEPAEPIAQKAAAPVSPNPASSRSASPEPAQQVDELLESEEAAPPPPPPPP 483
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 130 SVMRDFTSRCRARIRIRFSAVGYLSYARIEAFL 32
+V D +SR IRI F GY+S A IE +L
Sbjct: 240 TVKNDNSSRFGKFIRINFDMSGYISGANIEFYL 272
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 420 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 506
PP P ++++LI+D+ R +PG + +++R
Sbjct: 873 PPELPDQLRNLIEDVARRASPGPEQMNDR 901
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 420 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 506
PP P ++++LI+D+ R +PG + +++R
Sbjct: 772 PPELPDQLRNLIEDVARRASPGPEQMNDR 800
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,986
Number of Sequences: 27780
Number of extensions: 333165
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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