Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0295
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 29 2.1
At3g50370.1 68416.m05508 expressed protein 29 2.1
At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB... 29 2.1
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 28 5.0
At2g21330.1 68415.m02538 fructose-bisphosphate aldolase, putativ... 28 5.0
At4g22150.1 68417.m03201 UBX domain-containing protein similar t... 28 6.6
At4g04210.1 68417.m00597 UBX domain-containing protein similar t... 28 6.6
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 28 6.6
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 27 8.7
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 27 8.7
At2g42280.2 68415.m05234 basic helix-loop-helix (bHLH) family pr... 27 8.7
At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family pr... 27 8.7
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 327 TPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPM 437
+PS S+ +VD + + ++LPP LPP +P+
Sbjct: 371 SPSISSLTEEKTWIVDGKADNISALPPKPQLPPSSPI 407
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 255 SGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTP 434
S + F++ + E+ +D + +C +++S P+H VDS + R S+ S P
Sbjct: 990 SNLVLGFNEGVEVEIPSDDFE-KCQRNSESTFPLHQHTVDSLDDERPSIETSRGEQAAQP 1048
Query: 435 MEVKD 449
V D
Sbjct: 1049 AVVSD 1053
>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 515
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 60 RYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAP 176
R+ +N +RMR + ++VKSR+ E+ R G AP
Sbjct: 252 RFLPTKNNLRMRQINKEVKSRLREIIMKRQRGMDTGEAP 290
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -1
Query: 593 HRGKDTVRHSGIENRCQHHDELDG*KFNNAVGYTVGTGSLART*VFDQVFNFHRGDGW*R 414
H G H +E + +H + G FN +G+T TG A + + G G+
Sbjct: 225 HIGGALPHHELVEWKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYG-GY-A 282
Query: 413 IRGWQGGSAFY 381
+ W+ S FY
Sbjct: 283 SQPWERYSDFY 293
>At2g21330.1 68415.m02538 fructose-bisphosphate aldolase, putative
strong similarity to plastidic fructose-bisphosphate
aldolase (EC 4.1.2.13) from Nicotiana paniculata
(NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057
[SP|Q40677]
Length = 399
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 138 DARWSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 257
D W L+GLA +YY+ AR K TVV++P GPS
Sbjct: 160 DESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPN--GPS 198
>At4g22150.1 68417.m03201 UBX domain-containing protein similar to
XY40 protein [Rattus norvegicus] GI:2547025; contains
Pfam profile PF00789: UBX domain
Length = 302
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 258 GRLAAFDDDEKAELLADTLQTQCTPSTQSVD---PVHVELV 371
G L DD E A L +++C + VD PVHV L+
Sbjct: 130 GPLRKLDDPENASFLDSIRKSECPKELEPVDKRAPVHVNLM 170
>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
XY40 protein [Rattus norvegicus] GI:2547025; contains
Pfam profile PF00789: UBX domain
Length = 303
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 258 GRLAAFDDDEKAELLADTLQTQCTPSTQSVD---PVHVELVDSE 380
G L DD E A L +++C + D PVHV L+ E
Sbjct: 126 GPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLMRKE 169
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = +3
Query: 147 WSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQC 326
W+D G Q Y R +R L+S V + P L RL ++ DE+ DT +QC
Sbjct: 136 WNDDRGGGGGDQTVYKRFSR-LRS--VSSYPDL-----RLREYEADERWRFYDDTRVSQC 187
Query: 327 TPSTQSVDPVHVELVDSEVERRASLPPSD 413
+ VDP++ PP D
Sbjct: 188 --RYEDVDPIYPNQSYRNWHEEGKPPPED 214
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 403 HPLMRYHPSPRWKLKT*SKTYVLARLPVPTVYPTALLNF 519
HP Y PSP+ K+ YV + P P P+ +N+
Sbjct: 537 HPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVNY 575
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 388 AEPPCHPLMRYHPSPRWKLKT*SKTYVLARLPVPTVY 498
+ PP P Y PSPR K+ YV LP P VY
Sbjct: 312 SSPP--PPTYYSPSPRVDYKSPPPPYVYNSLPPPYVY 346
>At2g42280.2 68415.m05234 basic helix-loop-helix (bHLH) family
protein
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Frame = +3
Query: 252 PSGRLAAFDDDEKAELLADTLQTQCTPST---------QSVDPVHVELVDSEVERRASLP 404
PS LAAF DD+K +D L ++ S + D V L ++ V A+LP
Sbjct: 24 PSSVLAAFVDDDKIGFDSDRLLSRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLP 83
Query: 405 PSDALPP 425
P L P
Sbjct: 84 PPPQLEP 90
>At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family
protein
Length = 359
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Frame = +3
Query: 252 PSGRLAAFDDDEKAELLADTLQTQCTPST---------QSVDPVHVELVDSEVERRASLP 404
PS LAAF DD+K +D L ++ S + D V L ++ V A+LP
Sbjct: 24 PSSVLAAFVDDDKIGFDSDRLLSRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLP 83
Query: 405 PSDALPP 425
P L P
Sbjct: 84 PPPQLEP 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,444
Number of Sequences: 28952
Number of extensions: 318878
Number of successful extensions: 1069
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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