Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0294
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    36   0.005
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   2.1  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.7  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +2

Query: 275 MLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPT 454
           + GR P      +QK L +G+K+FDSGDY + K    +                G  IP+
Sbjct: 40  LYGRLPQRKDLLVQK-LQQGRKYFDSGDYALNKAGKAS---------DSGITCIGKEIPS 89

Query: 455 PETVPLRKTSIIQPKYTTPSQTS*P 529
           P+T+P R  S   P       T  P
Sbjct: 90  PDTIPHRVVSAGSPNKEPSLHTKRP 114


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 451 YS*NRTIKEDFHHSAKIHYTKSDILALYHYESTLQLQKVNIEEHII 588
           Y  N T K+   + A+I   K+ +   YH  S LQ   VN+   +I
Sbjct: 217 YPINSTQKQQAKYEAEIEGYKAKLAGTYHEISVLQNTIVNVSGQLI 262


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 MRCWVEGPVVILHFCKKD*PRDKNSLILATIKW 368
           M+C  E P+  + +   + P + + L+L +I W
Sbjct: 40  MKCQCENPMAAITYADIEYPHNTHFLLLDSISW 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,499
Number of Sequences: 5004
Number of extensions: 35361
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)