Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0294
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57837| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_49794| Best HMM Match : CBS (HMM E-Value=2.8)                       27   9.0  

>SB_57837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 26/59 (44%), Positives = 32/59 (54%)
 Frame = +2

Query: 311 LQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPETVPLRKTSI 487
           ++KRL K  K+FDSGDY MAK R  N                G  IPTP+ +P RKTS+
Sbjct: 58  MRKRLQKRVKYFDSGDYMMAKSRDKN----PRGPVNPAVLAVGKGIPTPDKIPHRKTSV 112


>SB_49794| Best HMM Match : CBS (HMM E-Value=2.8)
          Length = 120

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 278 LGRGPSGHSAFLQKRLA-KGQKFFDSGDYQMAKQRPGN 388
           LGR  SG  +  + RLA +G+K+ DS D    KQ P N
Sbjct: 53  LGR-LSGVVSLKELRLAIEGEKYLDSADVNNTKQGPAN 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,647
Number of Sequences: 59808
Number of extensions: 255831
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)