Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0294
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07610.1 68418.m00872 F-box family protein similar to unknown...    30   1.4  
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    29   1.8  
At4g22180.1 68417.m03206 F-box family protein contains F-box dom...    27   9.7  

>At5g07610.1 68418.m00872 F-box family protein similar to unknown
           protein (emb|CAB85517.1)
          Length = 420

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 505 SVFWLNDGSLP*WYGFRSRDCIT 437
           SVFW  +G++  WYGF SRDC++
Sbjct: 237 SVFW--NGAVN-WYGFSSRDCLS 256


>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 164 VFIDRPINFKNCYKTTFYSKL--VENKGIPN*YRYSTIEFLCSDFHDFSLD 18
           + +DR     +CY  T    L  V++ GIP   R     FLC+D+H  S D
Sbjct: 410 ILVDRHGRVHHCYGGTIEKALCHVQSHGIP---RDVVTNFLCTDYHPPSAD 457


>At4g22180.1 68417.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 359 SRQNQRIFVPWLVFFAEMQNDH 294
           SRQ+  I +PWL+ F E  N++
Sbjct: 55  SRQSVPIQIPWLILFPEYDNNN 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,055
Number of Sequences: 28952
Number of extensions: 178144
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)