Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0293
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.88 
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    27   3.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.7  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    26   6.2  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   8.2  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 194 YKPHVTSYVPAIYTLPHYGYGNMINNYPENNIYFNKKQEKPANGYFKQ 337
           Y P V SY P+I ++P+    N++ N  E+N+        PA+G + Q
Sbjct: 295 YSPQVDSYSPSINSVPY--TSNIVENPSEDNL---SPLPPPASGPYSQ 337


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 281 NNIYFNKKQEKPANGYFKQW*KFLITIN*DY*KKIMYCKLI 403
           NN   N KQE  +N Y  +   F+  ++ +Y K+I+ C+ +
Sbjct: 15  NNETQNHKQEDHSNSYQTRTIPFIEPLSREYQKRIILCQTV 55


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 191 YYKPHVTSYVPAIYTLPHYGYGNMINNYPENNIY 292
           YY P      P  + +P YG      +YP  N Y
Sbjct: 658 YYNPAQFQNAPTNFPMPTYGGRTQDQSYPRQNGY 691


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 161 QGNEQVYCEKYYKPHVTSYVPAIYT----LPHYGYGNMINNYPENNIYFNKKQE 310
           +G E     +  K ++ S +P + +    L    Y  M+ NYPE   YFNK  +
Sbjct: 24  EGYEIKELNESQKQYIRSSIPILESSGVNLTKAFYQKMLGNYPEVLPYFNKAHQ 77


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 YGYGNMINNYPENNIYFNKKQE 310
           YGY N+ + YP +++ F K  E
Sbjct: 361 YGYDNLKHTYPAHSVTFGKPFE 382


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 185 EKYYKPHVTSYVPAIYTLPHYGYGNMINNYP 277
           +K   P    Y P  Y    Y YGN   +YP
Sbjct: 90  DKLLGPSRYGYYPQSYANQSYTYGNNFGSYP 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,647
Number of Sequences: 5004
Number of extensions: 53179
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)