Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0293
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_9413| Best HMM Match : GRP (HMM E-Value=2.4)                        28   6.6  

>SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 101 QSWKDNRWRPIIAHYLNGKVQGNEQVYCEKYYKPHVTSYVPAIY 232
           Q+++   ++P I  Y     +   Q YC KY+KP++ +Y P  Y
Sbjct: 405 QTYRPKYYKPYIQTYCPKYYKPYIQTYCPKYHKPYIQTYCPKYY 448



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 101 QSWKDNRWRPIIAHYLNGKVQGNEQVYCEKYYKPHVTSYVP 223
           Q++    ++P I  Y     +   Q YC KYYKP++ +Y P
Sbjct: 441 QTYCPKYYKPYIQTYCPKYHKPYIQTYCPKYYKPYIQTYCP 481



 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 125 RPIIAHYLNGKVQGNEQVYCEKYYKPHVTSYVPAIY 232
           +P I  Y     +   Q YC KY+KP++ +Y P  Y
Sbjct: 437 KPYIQTYCPKYYKPYIQTYCPKYHKPYIQTYCPKYY 472


>SB_9413| Best HMM Match : GRP (HMM E-Value=2.4)
          Length = 244

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 215 YVPAIYTLPHYGYGNMINNYPENNIYFNKKQ 307
           Y PA  T P+ GYG+M+  YP    Y ++ Q
Sbjct: 47  YQPAYSTFPNTGYGSMM-GYPAAGFYQDEAQ 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,531,994
Number of Sequences: 59808
Number of extensions: 363175
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)