Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0293
(718 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 26 0.41
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 24 1.2
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 24 1.2
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.8
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 3.8
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 3.8
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 6.7
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 21 8.8
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 21 8.8
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 25.8 bits (54), Expect = 0.41
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 152 H*GNVRLLAATDYLSNSA*NQLLQNSVIIILQFCVPCLCITDYFLVPNS 6
H G ++A + LSN N L ++ +I F + C Y L PN+
Sbjct: 70 HTGESIVVAPSQTLSNKEYNMLRTTAINVIRHFGIVGECNIQYALNPNT 118
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 24.2 bits (50), Expect = 1.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 242 HYGYGNMINNYPENNIYFN 298
+Y Y N NNY +Y+N
Sbjct: 308 NYNYKNYNNNYNSKKLYYN 326
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 1.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 242 HYGYGNMINNYPENNIYFN 298
+Y Y N NNY +Y+N
Sbjct: 319 NYNYKNYNNNYNSKKLYYN 337
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 95 FKQSWKDNRWR 127
F Q+WKDNR R
Sbjct: 88 FAQTWKDNRLR 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 60 DLRITPNKLWKPD 72
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 60 DLRITPNKLWKPD 72
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 60 DLRITPNKLWKPD 72
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 60 DLRITPNKLWKPD 72
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 60 DLRITPNKLWKPD 72
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 60 DLRITPNKLWKPD 72
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 91 NYNYNNNYNNYNKHNYNKLYYN 112
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 128 DLRITPNKLWKPD 140
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 226 DLHITPLRIWKYD 264
DL ITP ++WK D
Sbjct: 128 DLRITPNKLWKPD 140
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 324 NYNYNNNYNNYNKHNYNKLYYN 345
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 242 HYGYGNMINNYPENN---IYFN 298
+Y Y N NNY ++N +Y+N
Sbjct: 324 NYNYNNNYNNYNKHNYNKLYYN 345
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 6.7
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = +2
Query: 242 HYGYGNMINNYPEN-NIYFNKKQ 307
+Y Y N NNY N N + K Q
Sbjct: 91 NYNYNNNYNNYNNNYNTNYKKLQ 113
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 565 KTNFSIMIIH*LKLV 609
K NFSIM IH + L+
Sbjct: 2 KENFSIMFIHSIFLI 16
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 565 KTNFSIMIIH*LKLV 609
K NFSIM IH + L+
Sbjct: 2 KENFSIMFIHSIFLI 16
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,914
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 32
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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