Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0293
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00...    29   3.1  
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati...    29   4.1  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    28   7.1  

>At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00646
           F-box domain; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 346

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 120 RLSFQLCLKSAFTKLSNNNTAILCTMSVHY 31
           R   +LCLK+ FT + NN T I  T  V Y
Sbjct: 186 RFPKELCLKTLFTAVDNNLTLISATEEVIY 215


>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
           / glucose phosphomutase, putative strong similarity to
           SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
           (Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
           InterPro accession IPR006352: Phosphoglucosamine mutase
          Length = 583

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 107 WKDNRWRPIIAHYLNGKVQGNEQ-VYCEKYYKPHVTSYVPAIYTLPHYGYGNM 262
           W    W  I+AH   G + GN + V  E   + H  +Y    YT   Y Y N+
Sbjct: 403 WAVLAWMSILAHKNKGNIDGNAKLVSVEDIVRQHWATYGRHYYT--RYDYENV 453


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 161 QGNEQVYCEKYYKPHVTSYVPAI----YTLPHYGYGNMINNYP 277
           +GN+ VYCE+     + + +  +    YTL  Y YG+  +NYP
Sbjct: 295 EGNK-VYCEQILNSDLKAELEKLKEKEYTLSDYYYGSSSSNYP 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,793
Number of Sequences: 28952
Number of extensions: 249577
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)