Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0292
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.8  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    26   6.6  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    26   6.6  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 LYDWQYLGFMVLLPMVLHWFF 436
           L+ W Y+ +  LLP +LH  F
Sbjct: 263 LFPWIYMDYKTLLPQILHRVF 283


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 398 FMVLLPMVLHWFFIDMVTR 454
           F  L+P +LHWF I  + R
Sbjct: 356 FQALMPDILHWFGIKKIDR 374


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 377 YDWQYLGFMVLLPMVLHWFFIDMVTRG 457
           Y+  Y  F VLL M++ ++FI   T G
Sbjct: 196 YEGTYGVFFVLLGMIISYYFIGSTTAG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,207
Number of Sequences: 5004
Number of extensions: 54964
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)