Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0292
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0257 + 1898950-1899636                                           28   6.9  
09_03_0103 - 12383585-12384700                                         28   6.9  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     28   6.9  
06_01_1200 + 10323013-10324428                                         28   9.2  

>12_01_0257 + 1898950-1899636
          Length = 228

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 281 EDGSWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVL 409
           E G   DC  C +GF        MPC D    ++     ++V+
Sbjct: 137 EKGEAKDCPVCLQGFEEGDKLRRMPCADSHCFHEQCIFSWLVI 179


>09_03_0103 - 12383585-12384700
          Length = 371

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 369 PLYMTGSTLALWSSCPWFCIGF 434
           P+Y  GS+   +SSC W C+GF
Sbjct: 136 PMYTAGSSQ--FSSCNWHCLGF 155


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 224 YRMAAVRSCPGLYCGRIELEDGSWSDCGACPRGFRTNASSY 346
           Y    +  CPG   GR+E E+GS +  G C        + Y
Sbjct: 131 YMTGCMAMCPG--AGRLEKENGSCAGVGCCQTAIPAGLNGY 169


>06_01_1200 + 10323013-10324428
          Length = 471

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 321 PRGHAPQSLHDPSSSSIRPQYSPGHDLTAA 232
           P+   PQ+LHDP+    R   + G  LT+A
Sbjct: 181 PKASIPQALHDPNHLFTRQFVANGRSLTSA 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,196
Number of Sequences: 37544
Number of extensions: 324817
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)