Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0292
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   6e-17
SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)                  33   0.25 
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_17877| Best HMM Match : Metallophos (HMM E-Value=2.1)               28   7.1  
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   7.1  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  28   7.1  
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)                       28   9.4  

>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = +2

Query: 239 VRSCPGLYCGRIELEDGSWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPM 418
           +  CPG YCGR++  +G +  C ACPRG+R+     C+ C     L+DW YLGF++L  +
Sbjct: 27  LEKCPGQYCGRVQDRNGKFGKCQACPRGYRSYGD-LCVKCTKSLRLHDWLYLGFIILTVI 85

Query: 419 VLHWFFID 442
           VLHWFFID
Sbjct: 86  VLHWFFID 93


>SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)
          Length = 173

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 VRSCPGLYCGRIELEDGSWSDCGAC 313
           +  CPG YCGR++  +G +  C  C
Sbjct: 140 LEKCPGQYCGRVQDRNGKFGKCQVC 164


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 260 YCGRIELEDGSWSDCGACPRGFRTN--ASSYCMPC 358
           +CG  +     WS C  CP G  T+   SS C+ C
Sbjct: 598 FCGTGDYSQPGWSKCKPCPSGTFTDVPGSSECLRC 632


>SB_17877| Best HMM Match : Metallophos (HMM E-Value=2.1)
          Length = 248

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 266 GRIELEDGSWSDCGACPR 319
           GR EL D +  DC ACPR
Sbjct: 98  GRTELRDRNQKDCEACPR 115


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 YCGRIELEDG-SWSDCGACPRGFRTNASSYCMPC 358
           Y G+   + G    DCG C  GF    S  C PC
Sbjct: 78  YGGQCRCKPGVEGRDCGRCKPGFYNMTSEGCRPC 111


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 YCGRIELEDG-SWSDCGACPRGFRTNASSYCMPC 358
           Y G+   + G    DCG C  GF    S  C PC
Sbjct: 44  YGGQCRCKPGVEGRDCGRCKPGFYNMTSEGCRPC 77


>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
          Length = 760

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 469 YSRFTPGDHVNEKPMQNHGQEDHKAKVL 386
           Y R + GDH +  P   H + DHK  V+
Sbjct: 226 YYRHSRGDHKDNHPYYRHSRGDHKVCVV 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,386,334
Number of Sequences: 59808
Number of extensions: 412496
Number of successful extensions: 1746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)