Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0292
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    55   5e-08
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    55   5e-08
L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease pr...    32   0.38 
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    32   0.38 

>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +2

Query: 290 SWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFFI 439
           S S CG C  G+R NA S C  C      YDW YL F+ LLP++LH  FI
Sbjct: 43  SLSRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFI 92


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +2

Query: 290 SWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFFI 439
           S S CG C  G+R NA S C  C      YDW YL F+ LLP++LH  FI
Sbjct: 43  SLSRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFI 92


>L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease
           protein.
          Length = 570

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 302 CGACPRGFRTNASSYCMPCVDEPSLYDWQ 388
           C  C +G+   +  YC PC  E S   WQ
Sbjct: 452 CEKCSKGYGKGSIGYCRPCCPEGSTKSWQ 480


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 302 CGACPRGFRTNASSYCMPCVDEPSLYDWQ 388
           C  C +G+   +  YC PC  E S   WQ
Sbjct: 824 CEKCSKGYGKGSIGYCRPCCPEGSTKSWQ 852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,893
Number of Sequences: 27780
Number of extensions: 304145
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)