Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0292
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +2

Query: 284 DGSWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHW 430
           D  +++C   P  FR       MPC   PS      + F+    + L W
Sbjct: 290 DYGFTECRCDPGYFRAEKDPKKMPCTQPPSAPQNLTVNFVDQSTVFLSW 338


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 63  YKFYNSLIPKLLKVPAARGIH 1
           YK+   LI K LK+    G+H
Sbjct: 312 YKYITPLIQKHLKIHDTCGVH 332


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 267 PQYSPGHDLTAAIL*W 220
           P ++PGHD    +  W
Sbjct: 24  PHFAPGHDAIVHLFEW 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,782
Number of Sequences: 438
Number of extensions: 3884
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)