Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0291
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   3.5  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   4.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.6  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 244 INEKEYPKITSWLKRCSELDFYQRGNNVKGLLEFKALL 131
           I+++EY +    L    E     +  +V+G LEF+ALL
Sbjct: 293 ISQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALL 330


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 341 LLREIIS*LYFGQTLRLE 394
           LL+EII   YFG T  L+
Sbjct: 51  LLQEIIPKSYFGTTTNLK 68


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 341 LLREIIS*LYFGQTLRLE 394
           LL+EII   YFG T  L+
Sbjct: 51  LLQEIIPKSYFGTTTNLK 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,293
Number of Sequences: 336
Number of extensions: 1569
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)