Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0291
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    29   0.28 
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   1.1  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    27   1.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    27   1.5  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   2.0  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   2.6  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    25   3.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   4.5  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   4.5  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    24   7.9  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    24   7.9  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    24   7.9  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    24   7.9  

>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 313 GDDVTVADMSCVATIGSLDALLPINEKEYP 224
           G D+ VAD S   T  S DA++ + +K YP
Sbjct: 655 GSDILVADPSTTVTPKSRDAVMDVVQKYYP 684


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 391 KPQGLAKIKSAYDFTEKFLSDSPWIAGDDVTVADM 287
           K    A IKS  D +E F + S WI G D    D+
Sbjct: 501 KKDSSAPIKSLLDRSEFFTNVSHWIIGSDAWAYDL 535


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -1

Query: 355 DFTEKFLSDS--PWIAGDDVTVADMSCVATIGSLDALLPINEK--------EYPKITSWL 206
           D  E+ L +S  P++ GD +T  D+    TI   D +   + K         YP I  WL
Sbjct: 207 DRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFDPVYVQHFKCNIGTIRHNYPHINQWL 266

Query: 205 KR 200
           KR
Sbjct: 267 KR 268


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 400 TTFKPQGLAKIKSAYD-FTEKFLSDSPWIAGDDVTVADMSCVA 275
           T F PQG  K  S YD + E+ L     I+     +  + C+A
Sbjct: 324 TRFSPQGFEKFYSNYDYYKERILLRPQVISNHPEIIRRLGCIA 366


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 268 GSLDALLPINEKEYPKITSWLKRCSELDFYQ 176
           G LD LLP+ +     I S  K   +L FY+
Sbjct: 30  GKLDILLPVEDASEEAIRSITKIVQDLSFYE 60


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = -1

Query: 352 FTEKFLSDSPWIAGDDVTVADMSCVAT-IGSLDALLP----INEKEYPKITSWLKRCSEL 188
           F EKFL + P  A D+  +A  S     I  + A L     +N         W+   S  
Sbjct: 153 FFEKFLEEFPERANDEWFIAGESFAGQYIPHIAAKLKEKNLVNLGGLAIGNGWINPLSHY 212

Query: 187 DFYQRGNNVKGLLEFKALLKQYL 119
           + Y      KG+++F++ L QYL
Sbjct: 213 ETYLNYLVEKGMVDFESELGQYL 235


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 307 DVTVADMSCVATIGSLDALLPINEKEYPKITSWLK 203
           +V+ A  SC+  I  L  ++   + + PK + WL+
Sbjct: 98  EVSSAISSCIHQIAKLQEIVKEQQSQIPKKSGWLQ 132


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 274 TIGSLDALLPINEKEYPKITSWLK 203
           T  SL  L P+NE+   + +SW K
Sbjct: 3   TASSLSVLTPLNEENVDRKSSWSK 26


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 245 RQERIQTADCSNTAHISHS 301
           R + +   DC   AH+SHS
Sbjct: 532 RSQEVSKVDCQLAAHVSHS 550


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 280 VATIGSLDALLPINEKEYPKITSWLKRCSELDFYQRGNNVKGLL 149
           +A +  L  +      +Y   TS  +  +  +FY+RG  + GLL
Sbjct: 227 MAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLL 270


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 96  FFYSFPRLKYCFSNALNSNRPFTLFPLW 179
           FF +F  L Y F   +    PFTL   W
Sbjct: 180 FFCTFQLLFYAFRPLVVRRLPFTLMHFW 207


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 352 FTEKFLSDSPWIAGDDVTV 296
           +  KF+S +PW A DD  V
Sbjct: 51  YIPKFISTAPWYAQDDDAV 69


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 289 MSCVATIGSLDALLPINEKEYPKITSWL 206
           MS V  + S DAL  I++K++P    W+
Sbjct: 267 MSVVGGVVSQDALNSISKKQFPIDNFWI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,368
Number of Sequences: 5004
Number of extensions: 28245
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)