Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0291
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 39   0.002
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               30   0.84 
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 27   7.8  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 379 LAKIKSAYDFTEKFLSDSPWIAGDDVTVADMSCVATIG-SLDALLPINEKEYPKITSWLK 203
           +A I     F EK L+   ++ GD VT+AD S   +I   L +L   + K Y  I SW  
Sbjct: 120 VADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIAVILTSLGDEDRKPYQNIVSWYT 179

Query: 202 RCSELD 185
              E D
Sbjct: 180 ALVESD 185


>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 237 SLIGKSASKLPIVATQLISATVTSSPAIHG 326
           S+  +  S +P+V TQ ++ TVTSSP + G
Sbjct: 576 SMSSRVTSCVPLVVTQSLTKTVTSSPIVAG 605


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 INRQERIQTADCSNTAHISHSDVIACDPR*IRKKLLREIIS*LYFGQTLRLE 394
           + R E++   +  ++ H+   DVI  D + +R+   R ++    FG+ + L+
Sbjct: 1   MTRDEKVHYFEADSSDHVPDYDVIKLDNQRLRRDPPRNLLRLPIFGKDMELQ 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,365
Number of Sequences: 59808
Number of extensions: 194472
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)