Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0290
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             179   2e-45
SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        178   4e-45
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.6  
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              28   7.6  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  179 bits (436), Expect = 2e-45
 Identities = 78/147 (53%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
 Frame = +1

Query: 214 FPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNP-EFVKDGSNADVASDSYHLYKR 390
           FP +F +G +T+A QIEGAW+VDGK   +WD+L H +    +      DVA DSYH YK 
Sbjct: 36  FPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDSYHKYKE 95

Query: 391 DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 570
           D +++  LGV  YRFS+SWPRILP G    IN  GI YYNNLINE+L YNI P+ TIYHW
Sbjct: 96  DVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATIYHW 155

Query: 571 DLPQKLQDIGGWSNAHIVDYYTDYAKI 651
           DLP   +  G W+N+ I++++ DYA+I
Sbjct: 156 DLPVPFRMAGSWTNSSIIEHFNDYAEI 182


>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  178 bits (433), Expect = 4e-45
 Identities = 75/147 (51%), Positives = 106/147 (72%)
 Frame = +1

Query: 211 KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 390
           +FPE+FI+GV+TAA QIEGAWN DGK  +IWD   HK    + +  NAD+A DSYH    
Sbjct: 14  QFPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHKTGN-IHNNENADIACDSYHKTDE 72

Query: 391 DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 570
           D +++  LGV  YRFS+SW RILP GL + +N+ G+ YYN +I+++L  NI P+ T+YH+
Sbjct: 73  DIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHF 132

Query: 571 DLPQKLQDIGGWSNAHIVDYYTDYAKI 651
           DLPQ LQD GGW N+ +++++  YA++
Sbjct: 133 DLPQALQDKGGWLNSRVIEWFAGYARV 159


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 14  IFNTKQIKV--NYVLCDLTFIDLTLVLTSSVKYTSLFILK 127
           +   KQ++V  NY+LC L   DL   L S   +TS  IL+
Sbjct: 119 VIKVKQLRVTTNYLLCSLAVSDLLTGLVSIPLFTSCNILQ 158


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 403 PFQHRAYINDKNLMQRPRWIHL*RTRGFCAPNDPKYF 293
           P  H+A+    NL +  R++H  + R    P D KYF
Sbjct: 487 PVCHKAFSQTGNLSKHVRYVHEKQQRPKEKPRDKKYF 523


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 364 SDSYHLYKRDAEMVHELGVDTYRFSVSWPRILPT 465
           SDS  ++KR +  V    VDT+R S    +ILPT
Sbjct: 112 SDSATVHKRRSSSVSSHIVDTWRLSKDEAKILPT 145


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 229 IFGVST--AAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKRDAEM 402
           +FGV +    + +  A N  G  ES      +  P+ V    + DV +D Y     + E+
Sbjct: 131 VFGVPSFGGCSDLFIADNAGGNEESYTRSHTYARPQGVTSDGSCDVFADKYRFTPDEMEV 190

Query: 403 VHE 411
            HE
Sbjct: 191 FHE 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,046,703
Number of Sequences: 59808
Number of extensions: 413532
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)