Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0290
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.84 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 198 KYELQVSRKFHIWSIYSCCPN 260
           K++ +V +   +  +Y+CCPN
Sbjct: 216 KWDFKVIKATKVLKMYACCPN 236


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 464 VGSILGHDTENLYVSTPSS 408
           +G  L H T+NLY S  SS
Sbjct: 251 LGMALSHKTQNLYYSAMSS 269


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 330 LGVFVHQMIPNTFGFTVYIPSAL 262
           L ++ H M+P    F++Y P  L
Sbjct: 83  LSIYKHGMLPRGELFSLYYPQLL 105


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 330 LGVFVHQMIPNTFGFTVYIPSAL 262
           L ++ H M+P    F++Y P  L
Sbjct: 83  LSIYKHGMLPRGELFSLYYPQLL 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,589
Number of Sequences: 438
Number of extensions: 4609
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)