Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0289
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0210 - 15874289-15875663,15878248-15879263 28 2.8
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 2.8
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 27 4.9
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 27 6.5
12_02_0005 + 12192100-12192474 26 8.6
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 26 8.6
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 26 8.6
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 26 8.6
01_06_1608 - 38612754-38616947,38617030-38617095 26 8.6
>10_08_0210 - 15874289-15875663,15878248-15879263
Length = 796
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 40 RPHDVGRPWSPHEVPLHVLSEDRSVPI*ILPP 135
RP D PW PH + LS+ + + ++PP
Sbjct: 601 RPSDADNPWRPHYLVSRTLSQYCAYLLWLVPP 632
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 218 SPENVSKWAEIRRKEAAE 271
+PE + KW +I+RKEA E
Sbjct: 225 NPELIKKWTKIKRKEAKE 242
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 183 HHSSTKFTKCQTPLKM*ASGLKSEGKKLPNTTKCS 287
H +TK T C P+K AS + + K T CS
Sbjct: 962 HEKTTKRTTCALPVKEKASSPEGQHKNTIKRTTCS 996
>11_06_0223 -
21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 143 WLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 244
W+W YWA SP+ Y +S + S+WA
Sbjct: 743 WIWGYWA------SPMMYSQQAISINEFLASRWA 770
>12_02_0005 + 12192100-12192474
Length = 124
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 158 SNAKATDSGGKIYMGTERSSLRTCKGTSWGDQGRPTS*GRK 36
S A D G +G +S T KG +W DQ R S GR+
Sbjct: 57 SGATVEDGG----VGGSMASWLTWKGAAWADQRRRDSRGRE 93
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 143 WLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 244
W+W YW +SP+ Y + +S + S+WA
Sbjct: 714 WIWGYW------TSPMMYSNNALSVNEFLASRWA 741
>05_05_0254 -
23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 64 WSPHEVPLHVLSEDRSVPI*ILPPE---SVALALLGCRHRNF 180
W PLH E+R +P +LP + S + AL GC F
Sbjct: 598 WRAAVKPLHPPPEERPLPYILLPGDGERSFSCALRGCATHRF 639
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 26.2 bits (55), Expect = 8.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 44 LTMSDA-PGRPMKFPYTFSAKIAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNS 220
+TMSD G+ Y A + F Y L + + WAA+I + PL + N
Sbjct: 1176 ITMSDLLAGKSSLEDYRGIAFVGGFSYADVLDSA---KGWAASIRFNQPLIQQFQNFYNR 1232
Query: 221 PENVS 235
P+ S
Sbjct: 1233 PDTFS 1237
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 26.2 bits (55), Expect = 8.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 44 LTMSDA-PGRPMKFPYTFSAKIAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNS 220
+TMSD G+ Y A + F Y L + + WAA+I + PL + N
Sbjct: 1180 ITMSDLLAGKSSLEEYRGIAFVGGFSYADVLDSA---KGWAASIRFNQPLIQQFQNFYNR 1236
Query: 221 PENVS 235
P+ S
Sbjct: 1237 PDTFS 1241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,348
Number of Sequences: 37544
Number of extensions: 212514
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -