Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0289
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.2  
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              28   2.9  
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        27   6.7  
SB_57915| Best HMM Match : Dynein_heavy (HMM E-Value=1.8)              26   8.8  

>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 170  WRQPSNAKATDSGGKIYMGTERSSLRTCK 84
            ++Q    K  D  GK   G+ R SLRTCK
Sbjct: 2663 YKQGDPQKHEDLAGKTRAGSPRQSLRTCK 2691


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 62  PGRPMKFPYTFSAKIAQFPYKFYLQNLWLWRYWAAAIVISSP 187
           PG P   P+  + K +   + F     W W Y+ A+  +  P
Sbjct: 183 PGMPAAQPFVHAFKESNAAWNFCPAGKWSWEYYDASAEVPPP 224


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -3

Query: 161 PSNAKATDSG-GKIYM-GTE----RSSLRTCKGTSWGDQG 60
           P +  ++DSG G++++ G       SS+RTC    WG+ G
Sbjct: 301 PPDVPSSDSGRGRVWLSGVNCRGYESSIRTCSTRGWGNNG 340


>SB_57915| Best HMM Match : Dynein_heavy (HMM E-Value=1.8)
          Length = 185

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 190 EW*GNYDGGSPVTPKPQILEVKFIWELSDL 101
           +W   Y GG P+TP P+++   +I ++  L
Sbjct: 4   DWYLEYIGGLPLTPHPELMLTFYILQIFGL 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,528,072
Number of Sequences: 59808
Number of extensions: 230839
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)