Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0289
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 28 2.4
At1g73650.3 68414.m08526 expressed protein 28 2.4
At1g73650.2 68414.m08528 expressed protein 28 2.4
At1g73650.1 68414.m08527 expressed protein 28 2.4
At5g20050.1 68418.m02387 protein kinase family protein contains ... 27 3.1
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 27 5.5
At1g65450.1 68414.m07426 transferase family protein low similari... 26 7.2
At1g50840.1 68414.m05717 polI-like DNA polymerase, putative simi... 26 7.2
At1g18180.1 68414.m02260 expressed protein 26 7.2
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 26 9.6
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 27.9 bits (59), Expect = 2.4
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -3
Query: 272 VRQLLSF*FQPTCLHF--QGSLTFCEFCRRVVRKLR---WRQPSNAKATDSGGKIYMGTE 108
V+++L PTCLHF LTF E C +V+ W++ + KIY
Sbjct: 218 VQRMLLCGISPTCLHFPCNSELTF-ESCSKVLTPNLIEFWKRKIEEDLVPAADKIYCPYR 276
Query: 107 RSSLRTCK 84
R S+ K
Sbjct: 277 RCSMLMSK 284
>At1g73650.3 68414.m08526 expressed protein
Length = 302
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 149 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 250
W W +I + + NSPEN KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175
>At1g73650.2 68414.m08528 expressed protein
Length = 291
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 149 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 250
W W +I + + NSPEN KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175
>At1g73650.1 68414.m08527 expressed protein
Length = 290
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 149 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 250
W W +I + + NSPEN KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175
>At5g20050.1 68418.m02387 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 452
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 GRPMKFPYTFSAKIAQFPYKFYLQNL 142
GR ++ Y+F K+A P KF L++L
Sbjct: 73 GRELRIEYSFLRKVAGVPTKFKLEDL 98
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 177 FPHHSSTKFTKCQTPLKM*AS-GLKSEGKKLPNTTKC 284
+PH +K TK Q P K A+ G K E +++ KC
Sbjct: 33 WPHRYQSKKTKLQAPTKKPANKGGKKEDEEIIKQAKC 69
>At1g65450.1 68414.m07426 transferase family protein low similarity
to anthranilate N-hydroxycinnamoyl/benzoyltransferase
Dianthus caryophyllus GI:3288180, GI:2239091; contains
Pfam profile PF02458 transferase family
Length = 286
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 165 PPS*-FPHHSSTKFTKCQT 218
PPS FPHH KF C+T
Sbjct: 47 PPSVAFPHHELVKFQDCET 65
>At1g50840.1 68414.m05717 polI-like DNA polymerase, putative similar
to PolI-like DNA polymerase [Oryza sativa] GI:19912795
contains Pfam profiles PF01612: 3'-5' exonuclease,
PF00476: DNA polymerase I family A
Length = 1050
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 215 NSPENVSKWAEIRRKEAAE 271
N + V KW E+R+KEA E
Sbjct: 913 NDRQEVRKWQEMRKKEAIE 931
>At1g18180.1 68414.m02260 expressed protein
Length = 292
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Frame = +2
Query: 149 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 250
W W A +I + + PEN KW ++
Sbjct: 142 WTMWVAGFLIEATADQQKLSFKKCPENKGKWCDV 175
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 25.8 bits (54), Expect = 9.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 38 YALTMSDAPGRPMKFPYTFSAKIAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSN 217
+AL D +F S K+ Q ++FY + WR WAA + ++ YK M N
Sbjct: 583 FALRAEDLKFVANQFRRLHSKKL-QHTFRFYSHH---WRTWAACFIQAAWRRYKRRVMEN 638
Query: 218 S 220
+
Sbjct: 639 N 639
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,133,811
Number of Sequences: 28952
Number of extensions: 165055
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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