Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0282
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   5.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   9.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   9.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 262 YDSTSSQNKFFPG 224
           +DS S QN  FPG
Sbjct: 740 FDSRSRQNSSFPG 752


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 141 PRWVVAASILVTSSSLRASTSNPPDIV 61
           P+W  A   L  SSS + S    P IV
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIV 105


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 106 CHQNACCNHPSWGRKC*LPDG 168
           CH N  C     G +C  P G
Sbjct: 269 CHNNGTCLDKVGGFECKCPPG 289


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 5  IRHEAQWHYT 34
          IRH  QW+Y+
Sbjct: 70 IRHHGQWNYS 79


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 122 AATTHLGAENVNFQMETYVYKRRADGTH 205
           AAT HLG+       E++ +   +  TH
Sbjct: 148 AATHHLGSVYSRHPYESWPFNTMSGATH 175


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 417 SRNAAWIWLV 388
           S   AWIWLV
Sbjct: 214 SHQHAWIWLV 223


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 417 SRNAAWIWLV 388
           S   AWIWLV
Sbjct: 447 SHQHAWIWLV 456


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 417 SRNAAWIWLV 388
           S   AWIWLV
Sbjct: 447 SHQHAWIWLV 456


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,123
Number of Sequences: 336
Number of extensions: 2537
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)