Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0282
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 167 4e-42
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 163 4e-41
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 2.2
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 2.9
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 2.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 2.9
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 3.8
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 3.8
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 3.8
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 5.0
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 5.0
09_06_0103 + 20873310-20873382,20873530-20873735 27 6.6
06_03_0424 - 20648938-20649564,20650588-20650902 27 6.6
07_03_0133 + 14053076-14053280,14053524-14053642 27 8.7
05_01_0087 + 574623-574687,574797-574871,574987-575101 27 8.7
01_01_1015 + 8029884-8030676,8030755-8030771 27 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 167 bits (405), Expect = 4e-42
Identities = 79/128 (61%), Positives = 97/128 (75%)
Frame = +2
Query: 53 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 232
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 233 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAF 412
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR T G FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 413 REPRLLIV 436
EPRLLI+
Sbjct: 121 SEPRLLIL 128
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 163 bits (397), Expect = 4e-41
Identities = 76/117 (64%), Positives = 92/117 (78%)
Frame = +2
Query: 86 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 265
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 266 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAFREPRLLIV 436
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR T G FTNQ+Q +F EPRLLI+
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 153 TFSAPRWVVAASILVTSSSLRASTSNP 73
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 335 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 180
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 160 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 267
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 106 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 285
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 286 VRHLITALRSACCTEVCR 339
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 2 GIRHEAQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 175
G+ A+W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 239 GVPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 163 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 342
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 343 HRC 351
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 196 WYPCDQLASYLGKTCSGCSCCRSHREP 276
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 200 THVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTS 379
TH+ + R W L+ A +V + +P D+F +SSR + R V + A F +
Sbjct: 96 THLSH-REIWRVLLYAILLIVLL-SPFDMFYLSSRFYFLRTVWRIMLPLQAITFPDFFLA 153
Query: 380 GAFTN 394
FT+
Sbjct: 154 DIFTS 158
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 150 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 37
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 331 VCRAHRCYAYC---GTFHIRCFY*PDPSCIP*TSSLDC 435
+CR+ RC YC G RC + DPS ++ +C
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATEC 82
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 273 TPLMCSSSHHGPSVSVLY*SLP 338
TP SSSHH P +S L+ LP
Sbjct: 75 TPSSISSSHHTPPLSALHIMLP 96
>07_03_0133 + 14053076-14053280,14053524-14053642
Length = 107
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 235 TCSGCSCCRSHREPR*CVRHLITALRSACCTEVCR 339
T + C CC S R CV + ++ C CR
Sbjct: 26 TAAQCGCCISSRAKACCVGCIAAGGSNSVCKNTCR 60
>05_01_0087 + 574623-574687,574797-574871,574987-575101
Length = 84
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 229 GKTCSGCSCC 258
G +CSGCSCC
Sbjct: 72 GTSCSGCSCC 81
>01_01_1015 + 8029884-8030676,8030755-8030771
Length = 269
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +1
Query: 202 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYC 363
PC A+Y C G C SH VRH R C + V HR A+C
Sbjct: 7 PCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGVYR-LCSSCVLLGHR-DAFC 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,932
Number of Sequences: 37544
Number of extensions: 305639
Number of successful extensions: 737
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -