Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0282
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               203   6e-53
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)                  29   2.2  
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)               28   3.9  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 28   3.9  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  28   3.9  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   5.1  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 27   5.1  
SB_36649| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                27   5.1  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              27   6.8  
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    27   8.9  
SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)                  27   8.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  203 bits (495), Expect = 6e-53
 Identities = 93/124 (75%), Positives = 109/124 (87%)
 Frame = +2

Query: 65  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 244
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 245 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAFREPR 424
           AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFT G FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 425 LLIV 436
           LLIV
Sbjct: 121 LLIV 124


>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
          Length = 158

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 264 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 422
           PSRTPL   ++ +G  +S+ Y       VLR+ R   H ++ ++R  L ++N+
Sbjct: 49  PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100


>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 232 KTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCG 366
           +TC  C+ C        C      +L+  C  +   AHRC   CG
Sbjct: 594 RTCGRCNVCYDAENDSVC-----DSLKHTCSDDEATAHRCSLTCG 633


>SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)
          Length = 241

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +1

Query: 253 CCRSHREPR*CVRHLITALRSACCTEVCRAH-RCYAYCGTFHIRC 384
           CC      R C+ H    L   CC  VC A   C   C   H+ C
Sbjct: 16  CCCGSALKRNCLVHSDCGLAKKCCENVCLARLSCDGSCSA-HMDC 59


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 295 DDEHISGVLDGYDSTSSQNK 236
           ++EHI+ VLDGYD   S +K
Sbjct: 60  NEEHIAFVLDGYDELPSSSK 79


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 295 DDEHISGVLDGYDSTSSQNK 236
           ++EHI+ VLDGYD   S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 175 CLQTTC*WYPCD-QLASYLGKTCSGCSC 255
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 292  HLITALRSACCTEVCRAHRCYAYCGTF 372
            + + + R +  T++ R HRC  YC  F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575


>SB_36649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 262 SHREPR*CVRHLITALRSA 318
           +HR PR  V HL TA+RSA
Sbjct: 44  AHRSPRTIVEHLDTAIRSA 62


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 435 TIKRRGSRNAAWIWLVKAPDVKRPAIGVAPVCAANFS 325
           T+++RG ++A + W       +RP+     VC+ N S
Sbjct: 122 TMEKRGRKSATYFWPSSTSYERRPSFFADHVCSVNCS 158


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -1

Query: 350 HRCARQTSVQH-ADRRAVMR*RT--HQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 180
           H  +R  S  H   R    R  T  H+R     RQHE+      R+++S  H   +H   
Sbjct: 39  HETSRHESSPHETSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRS 97

Query: 179 RHRS 168
           RH++
Sbjct: 98  RHKT 101


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 115 NACCNHPSWGRKC*LPDGDLC 177
           N CC H SW  +C  PD  +C
Sbjct: 406 NPCCAHQSWRAEC--PDEGVC 424


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 429 KRRGSRNAAWIWLVKAPDVKRPAIGVAPVCAANFSTAR*PKGRD 298
           K RGS  A     +K PDV  P I +    ++   T   P+G D
Sbjct: 490 KPRGSSVAIINQPIKVPDVNAPGIAIVCQTSSGHQTDSKPRGDD 533


>SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)
          Length = 879

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 295 DDEHISGVLDGYDSTSSQNK 236
           ++EHI+ VLDGYD   S +K
Sbjct: 60  NEEHIAFVLDGYDELPSCSK 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,451
Number of Sequences: 59808
Number of extensions: 336259
Number of successful extensions: 782
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)