Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0282
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 179 7e-46
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 36 0.013
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.017
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 36 0.017
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 36 0.017
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 36 0.017
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 28 3.4
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 28 3.4
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 28 3.4
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 27 4.5
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 27 4.5
AL110482-8|CAE17990.1| 193|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 179 bits (436), Expect = 7e-46
Identities = 81/124 (65%), Positives = 101/124 (81%)
Frame = +2
Query: 65 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 244
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 245 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAFREPR 424
AARA+ A+ENPADV V+S+RP+ QRA+LKFAAHTGAT I GRF+ G TNQIQ F+EPR
Sbjct: 61 AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPR 120
Query: 425 LLIV 436
LL++
Sbjct: 121 LLVI 124
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 35.9 bits (79), Expect = 0.013
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 244 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 366
GC CC + C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 244 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 366
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 244 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 366
GC CC C R T R+ CCT C R C CG
Sbjct: 81 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 122
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 244 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 366
GC CC C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 244 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 366
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = +1
Query: 241 SGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCGTFHIRCFY*PDPSC 408
S SCC S C+ + +S+C T +C+ +C C PSC
Sbjct: 38 SSSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQ-QQCSNQCNQQCTSITISSGPSC 92
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 124 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 300
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 301 TALRSACCTEV-CRAHRCYAYCGT 369
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 124 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 300
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 301 TALRSACCTEV-CRAHRCYAYCGT 369
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 124 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 300
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 301 TALRSACCTEV-CRAHRCYAYCGT 369
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 35 RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 211
R+V T+ +L ++ D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 212 NLRRTWEKLVLAARAVVAI 268
T +V + +A+
Sbjct: 204 EDSATILNIVDEMKKTLAV 222
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 35 RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 211
R+V T+ +L ++ D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 212 NLRRTWEKLVLAARAVVAI 268
T +V + +A+
Sbjct: 204 EDSATILNIVDEMKKTLAV 222
>AL110482-8|CAE17990.1| 193|Caenorhabditis elegans Hypothetical
protein Y39G8B.10 protein.
Length = 193
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +1
Query: 196 WYPCDQLASYLGKTCSGCS 252
WY C Y KTC CS
Sbjct: 156 WYKCSDRIKYCPKTCGYCS 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,344
Number of Sequences: 27780
Number of extensions: 245641
Number of successful extensions: 549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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