Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0282
(437 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 157 3e-39
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 155 1e-38
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 155 1e-38
At2g22340.1 68415.m02651 hypothetical protein 33 0.11
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 2.4
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 27 4.2
At4g26490.1 68417.m03812 expressed protein 27 5.5
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ... 27 5.5
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 27 7.3
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR... 26 9.7
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR... 26 9.7
At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) / cyclin-d... 26 9.7
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 26 9.7
At2g31920.1 68415.m03899 expressed protein 26 9.7
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 26 9.7
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai... 26 9.7
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai... 26 9.7
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr... 26 9.7
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 157 bits (381), Expect = 3e-39
Identities = 73/117 (62%), Positives = 89/117 (76%)
Frame = +2
Query: 86 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 265
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 266 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAFREPRLLIV 436
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR T G FTNQ+Q +F EPRLLI+
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLIL 128
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 155 bits (376), Expect = 1e-38
Identities = 70/113 (61%), Positives = 88/113 (77%)
Frame = +2
Query: 98 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 277
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 278 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAFREPRLLIV 436
D+ V S+RP+GQRAVLKFA +TG IAGR T G FTNQ+Q +F EPRLLI+
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLIL 129
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 155 bits (376), Expect = 1e-38
Identities = 70/113 (61%), Positives = 88/113 (77%)
Frame = +2
Query: 98 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 277
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 278 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTSGAFTNQIQAAFREPRLLIV 436
D+ V S+RP+GQRAVLKFA +TG IAGR T G FTNQ+Q +F EPRLLI+
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLIL 129
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 136 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 255
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 202 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 324
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.5 bits (58), Expect = 4.2
Identities = 23/78 (29%), Positives = 27/78 (34%)
Frame = +1
Query: 106 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 285
CH C P G++ P G Q CD +A G TC C HR P C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366
Query: 286 VRHLITALRSACCTEVCR 339
R T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384
>At4g26490.1 68417.m03812 expressed protein
Length = 200
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 423 RGSRNAAWIWLVKAPDVKRPAIGVAPVCAANFST 322
R SR + WIW V RP I V + AN T
Sbjct: 29 RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62
>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
protein low similarity to cysteine-rich polycomb-like
protein (cpp1) [Glycine max] GI:4218187; contains Pfam
profile PF03638: Tesmin/TSO1-like CXC domain
Length = 360
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 166 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 285
G C Q+ C CD AS G C+ C C H C
Sbjct: 68 GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNNSEKC 105
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 343 HRCYAYCGTFHIRCFY*PDPSCIP 414
++C C T HI C PDP P
Sbjct: 437 YKCTYCCTTLHINCLLGPDPYLKP 460
>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1404
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 319 CCTEVCRAHRCYAYCGTFHIRCFY*PDPS 405
C E+ H+C+ G I FY DPS
Sbjct: 82 CLNELVEIHKCFNDLGQMVIPVFYDVDPS 110
>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1449
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 319 CCTEVCRAHRCYAYCGTFHIRCFY*PDPS 405
C E+ H+C+ G I FY DPS
Sbjct: 82 CLNELVEIHKCFNDLGQMVIPVFYDVDPS 110
>At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) /
cyclin-dependent kinase inhibitor 5 (ICK5) identical to
cyclin-dependent kinase inhibitor 5 (krp5) [Arabidopsis
thaliana] GI:14422293
Length = 189
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 376 CETSRNRRSTGVRGKLQYSTLTEGP**DDEHIS 278
C+T R S+G KL+ T TE D+E IS
Sbjct: 86 CQTKNPRASSGPAKKLEPDTTTEEACGDNERIS 118
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 429 KRRGSRNAAWIWLVKAPDVKRPAIGVAPVCAANFSTAR*PKGRDEMTNTSAG 274
K RGS+ +++ + D++ I A + T+ PKG D+M +T+ G
Sbjct: 11 KPRGSKAESFVDNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTANG 62
>At2g31920.1 68415.m03899 expressed protein
Length = 585
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 185 RRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRP 307
RR D +++ R KLVL ++++ IE+P+ F + P
Sbjct: 173 RRRDAALLLSSPRLKSKLVLNDKSLLKIESPSKYFNCGTSP 213
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 343 HRCYAYCGTFHIRCFY*PDP 402
++C C T HI C PDP
Sbjct: 549 YKCKDCCTTLHINCLLGPDP 568
>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 259
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 247 SQNKFFPGTTQVDHMGTISTSFV 179
SQ K+FPG+ ++ ++ TSFV
Sbjct: 33 SQEKYFPGSPYESNVNSLLTSFV 55
>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 288
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 247 SQNKFFPGTTQVDHMGTISTSFV 179
SQ K+FPG+ ++ ++ TSFV
Sbjct: 33 SQEKYFPGSPYESNVNSLLTSFV 55
>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
profile: PF00005 ABC transporters; similar to TAP1
protein (transporter of processed antigen) GB:AAD53033
(Oncorhynchus mykiss); identical to cDNA transporter
associated with antigen processing-like protein (TAP1)
GI:19335721
Length = 700
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 23 WHYTRLV-VTQISATMSGGLDVLA--LNEEDVTKML 121
W + L TQI A + GGL +LA + E +TK L
Sbjct: 364 WSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFL 399
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,375,329
Number of Sequences: 28952
Number of extensions: 225255
Number of successful extensions: 505
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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