Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0280
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    33   0.018
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   2.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   4.8  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   4.8  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 33.1 bits (72), Expect = 0.018
 Identities = 14/56 (25%), Positives = 34/56 (60%)
 Frame = +1

Query: 196 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHT 363
           M+ ++ ++ L+   ++G   VIL+CAL  +K W+P       ++ P+P ++ ++++
Sbjct: 1   MSDLRKIIGLSSVLAVGFMLVILSCAL--FKNWYPL------LIAPLPNLLTKKYS 48


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 96  KTKQIIYYLLAEVYFISGVFKQEENNY 176
           KT   +YY  A+V F+SG F +  ++Y
Sbjct: 412 KTDSDLYYHRAQVRFVSGEFAEAISDY 438


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 295 WPFFVVLFYILC-PIPTMIARRHTDGAGGSNSACMETAVFI 414
           +PF+ VLFY  C P+    A  H       +S+CM+   ++
Sbjct: 523 YPFYEVLFYDYCRPLNQAFASGHQRSV--IHSSCMDPEYYV 561


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 120 LLAEVYFISGVFKQEENNYT*NIKHNGWNKRFG 218
           ++A   F+S   K E N++  +     W +RFG
Sbjct: 166 MMAAAKFLSQYIKDESNSFVISSDFCHWGRRFG 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,488
Number of Sequences: 5004
Number of extensions: 32529
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)