Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0280
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1124 - 34279570-34279765,34280074-34280158,34280236-342802...    42   3e-04
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164...    34   0.053
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    33   0.093
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    27   6.1  
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42...    27   8.1  

>02_05_1124 -
           34279570-34279765,34280074-34280158,34280236-34280275,
           34280371-34280460
          Length = 136

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = +1

Query: 214 LVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIP 339
           L  LA   S G+   ILACAL  Y  WWP   VL Y++ P+P
Sbjct: 14  LALLAILVSGGIVLQILACAL--YNNWWPMLTVLMYLILPMP 53


>01_07_0303 +
           42615578-42615709,42616273-42616312,42616393-42616477,
           42616634-42616813,42618274-42618354,42618890-42619011,
           42619867-42620723,42621656-42621897,42622107-42622200,
           42622306-42622476,42622695-42622740,42624101-42624111,
           42624141-42624392
          Length = 770

 Score = 33.9 bits (74), Expect = 0.053
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 265 ACALPQYKLWWPFFVVLFYILCPIPTM 345
           ACAL  Y  WWP    L Y+L P+P +
Sbjct: 45  ACAL--YNNWWPMLAALMYVLVPMPCL 69


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +1

Query: 223 LAFAGSIGMTFV-ILACALPQYKLWWPFFVVLFYILCP 333
           LAF+G +G+TF+ ++A  +  +++ W ++VV+ Y+L P
Sbjct: 434 LAFSGYLGLTFIAVIAIPMMFHEMKW-YYVVIAYLLAP 470


>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 13  AIYHQSIQLSFKQLNFFYVMD 75
           A+Y   ++++ K  NFFYVMD
Sbjct: 211 AVYQYFLRMTSKDPNFFYVMD 231


>11_01_0056 +
           427376-427408,427589-427694,427777-427823,427907-428065,
           429018-429092,429379-429973,430529-430943,431105-431118,
           431476-431591
          Length = 519

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 271 ALPQYKLWWPFFVVLFYILCPIPTMIARRHTD 366
           A P  K+WWPF+       C    + + +HT+
Sbjct: 283 AFPSTKMWWPFWDPRRQFNCLQTCVASAKHTE 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,898
Number of Sequences: 37544
Number of extensions: 200492
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)