Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0280
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)                    29   2.1  
SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)                    28   2.7  
SB_39906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         27   8.3  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             27   8.3  
SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         27   8.3  

>SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 202 GIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCP 333
           G+   +  +F+GS+   FV L  ++P Y++ W   VV+   L P
Sbjct: 40  GLAFAILASFSGSVMALFVKLTISMPSYEVVWFRSVVVGVFLLP 83


>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
          Length = 486

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 3   RAAGNLSSKHSTFIQATKLLLCDG*LIKVKGKTKQIIYYLLAEVYFISGVFKQEENN 173
           R   N S    T     KLL+C   L+  +GK K++I   L E Y  S V K+ + N
Sbjct: 371 RIMANSSGSQPTIPLQQKLLVCTLLLMLKQGKVKEVILGKLHETY--SNVCKKRQVN 425


>SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)
          Length = 365

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 244 GMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIAR 354
           G  F  L    P++  WW  F  L ++ CP P  I R
Sbjct: 159 GPKFARLDSRRPEFSSWWIEFSELTHMECPQPDKIKR 195


>SB_39906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 252 ICHTSLCLTTIQTMVAILRCAILH 323
           ICH+   LTT   +V ILR  ++H
Sbjct: 40  ICHSPFALTTFSEIVKILRTPLVH 63


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 362  VCLLAIIVGIGHRM*NSTTKNGHHSLYC 279
            V ++   VG+G R+ NS+T N  H +YC
Sbjct: 1018 VAVVLFFVGLGLRL-NSSTFNAGHIIYC 1044


>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1626

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 296 HHSLYCGKAQASMTNVIPIEPANAND 219
           HH+  C + Q+S+    P  P N+ D
Sbjct: 330 HHTSICDRVQSSLPPSTPANPGNSRD 355


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 266 LVPYHNTNYGGHSSLCYS-TFC 328
           L  Y NT +GGH S C++ T C
Sbjct: 189 LASYCNTLFGGHGSACHTVTLC 210


>SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1019

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 296 HHSLYCGKAQASMTNVIPIEPANAND 219
           HH+  C + Q+S+    P  P N+ D
Sbjct: 17  HHTSICDRVQSSLPPSTPANPGNSRD 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,780
Number of Sequences: 59808
Number of extensions: 232655
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)