Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0280
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23450-3|AAN39678.1|  132|Caenorhabditis elegans Hypothetical pr...    92   2e-19
U23450-4|AAN39679.1|  130|Caenorhabditis elegans Hypothetical pr...    85   2e-17
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    31   0.44 
Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF016678-11|AAB66147.1|  343|Caenorhabditis elegans Serpentine r...    27   7.2  

>U23450-3|AAN39678.1|  132|Caenorhabditis elegans Hypothetical
           protein C30B5.2a protein.
          Length = 132

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 38/74 (51%), Positives = 55/74 (74%)
 Frame = +1

Query: 196 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDGAG 375
           M G++ + +LAFAG +G+TF++L CALP+Y  W P FV+ FY+L P+P +IARR  +   
Sbjct: 1   MGGVRAVAALAFAGVVGLTFLVLGCALPRYGTWTPMFVITFYVLSPVPLLIARRFQEDMT 60

Query: 376 GSNSACMETAVFIT 417
           G+N AC+E A+FIT
Sbjct: 61  GTN-ACIELALFIT 73


>U23450-4|AAN39679.1|  130|Caenorhabditis elegans Hypothetical
           protein C30B5.2b protein.
          Length = 130

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 37/74 (50%), Positives = 54/74 (72%)
 Frame = +1

Query: 196 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDGAG 375
           M G++ + +LAFAG +G+TF++L CALP  + W P FV+ FY+L P+P +IARR  +   
Sbjct: 1   MGGVRAVAALAFAGVVGLTFLVLGCALP--RTWTPMFVITFYVLSPVPLLIARRFQEDMT 58

Query: 376 GSNSACMETAVFIT 417
           G+N AC+E A+FIT
Sbjct: 59  GTN-ACIELALFIT 71


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +3

Query: 114 YYLLAEVYFISGVFKQEENNYT*NIKHNGWNKRFGVVGIRGFNWNDICHTSLCLTTIQTM 293
           Y+LL  VY IS   K +EN     ++  GW  R+ ++ I     N +   +   T + T 
Sbjct: 100 YFLLCFVYCISLACKNDENGLVVVLRKRGW--RYLILAIIDVEANYMIVKAYQYTNL-TS 156

Query: 294 VAILRCAILHSV 329
           V +L CA + +V
Sbjct: 157 VQLLDCATIPTV 168


>Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical
           protein F43D2.1 protein.
          Length = 252

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 246 NDICHTSLCLTTIQTMVAILRCAILH 323
           ND  +T+LC+TT   M+AI   A+LH
Sbjct: 170 NDSIYTTLCITTEPQMIAI---ALLH 192


>AF016678-11|AAB66147.1|  343|Caenorhabditis elegans Serpentine
           receptor, class i protein46 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 138 FISGVFKQEENNYT*--NIKHNGWNKRFGVVGIRGFNWNDICHTSLCLTTIQTM 293
           FI  VF + ++ ++   N      N   GVVG+ GF    +   ++ +TT+ TM
Sbjct: 179 FIDRVFPEYKSKFSSLHNFTIYQLNFSLGVVGVMGFTGIFVVFQAIAMTTMDTM 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,878
Number of Sequences: 27780
Number of extensions: 183795
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)