Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0280
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 211 GLVSLAFAGSIGMTFVILACALPQYKLWW 297
           G+V +A   S  +  V  AC  P+Y+ W+
Sbjct: 245 GVVHVAQDESTSLVCVAQACPTPEYR-WY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 211 GLVSLAFAGSIGMTFVILACALPQYKLWW 297
           G+V +A   S  +  V  AC  P+Y+ W+
Sbjct: 245 GVVHVAQDESTSLVCVAQACPTPEYR-WY 272


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 168 NNYT*NIKHNGWNKR 212
           NNY  N  +N +NK+
Sbjct: 93  NNYKYNYNNNNYNKK 107


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 168 NNYT*NIKHNGWNKR 212
           NNY  N  +N +NK+
Sbjct: 93  NNYKYNYNNNNYNKK 107


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 168 NNYT*NIKHNGWNKR 212
           NNY  N  +N +NK+
Sbjct: 93  NNYKYNYNNNNYNKK 107


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 168 NNYT*NIKHNGWNKR 212
           NNY  N  +N +NK+
Sbjct: 93  NNYKYNYNNNNYNKK 107


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 85  FINHPSHKRSLVA*MKVECFDDKLP 11
           FINH       V  + + C D  LP
Sbjct: 577 FINHSCDPNLAVYGVWINCLDPNLP 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,371
Number of Sequences: 438
Number of extensions: 2529
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)