Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0280
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11530.2 68416.m01406 vacuolar protein sorting 55 family prot...    41   3e-04
At1g32410.2 68414.m04000 vacuolar protein sorting 55 family prot...    41   4e-04
At1g32410.1 68414.m03999 vacuolar protein sorting 55 family prot...    41   4e-04
At3g11530.1 68416.m01405 vacuolar protein sorting 55 family prot...    35   0.026
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    28   2.2  
At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    28   2.2  
At5g47050.1 68418.m05798 expressed protein                             28   3.0  
At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containi...    27   3.9  
At4g34810.1 68417.m04940 auxin-responsive family protein similar...    27   6.8  
At4g17680.1 68417.m02641 expressed protein                             26   9.0  
At1g21940.1 68414.m02745 hypothetical protein                          26   9.0  

>At3g11530.2 68416.m01406 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 126

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +1

Query: 205 IKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTM 345
           I+ L  LAF  S  +   ILACA+  Y  WWP    L Y++ P+P M
Sbjct: 5   IEVLAGLAFMFSSSILLQILACAI--YGNWWPMLSALMYVVVPMPCM 49


>At1g32410.2 68414.m04000 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 223 LAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMI--ARRHTDGAGGSNSACM 396
           LA   S G+   ILACAL  +  WWP   V+ Y+L P+P +       T     S+++ +
Sbjct: 20  LAILVSTGIVLQILACAL--FNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWI 77

Query: 397 ETAVFIT 417
             A F+T
Sbjct: 78  NAAKFLT 84


>At1g32410.1 68414.m03999 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 223 LAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMI--ARRHTDGAGGSNSACM 396
           LA   S G+   ILACAL  +  WWP   V+ Y+L P+P +       T     S+++ +
Sbjct: 20  LAILVSTGIVLQILACAL--FNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWI 77

Query: 397 ETAVFIT 417
             A F+T
Sbjct: 78  NAAKFLT 84


>At3g11530.1 68416.m01405 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 113

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 ILACALPQYKLWWPFFVVLFYILCPIPTM 345
           ILACA+  Y  WWP    L Y++ P+P M
Sbjct: 10  ILACAI--YGNWWPMLSALMYVVVPMPCM 36


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 141 ISGVFKQEENNYT*NIKHNGWNKRFGVVGIRGFNWNDICH 260
           +SGV ++  ++Y+    HN  ++R G V +   NW D+ H
Sbjct: 250 VSGVAEKLRSDYSSTTNHNETHERDGGVSLASTNW-DLLH 288


>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 254 LSY*LVPYHNTNYGGHSSLCYSTFCAQYLR*SLGGILMVLEVQ 382
           L+Y L P   TNY    S+  +    Q+LR SLG I    E++
Sbjct: 299 LAYKLGPQAQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIE 341


>At5g47050.1 68418.m05798 expressed protein
          Length = 300

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 337 VLGTECRIAQRRMATIVCIVVRH 269
           ++G  CRI +RR AT++ +  RH
Sbjct: 248 MIGPGCRICRRRSATVLALPCRH 270


>At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 710

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 78  LIKVKGKTKQIIYYLLAEVYFISGVFKQEENNYT*NIKHN--GWNKRFGVV 224
           ++K K K  Q++Y +L ++Y  SG+F      +    + N   WN    V+
Sbjct: 262 IVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVL 312


>At4g34810.1 68417.m04940 auxin-responsive family protein similar to
           auxin-induced protein X10A5 (SP:P33079) [Glycine max];
           small auxin up RNA (SAUR-AC1), Arabidopsis thaliana,
           PIR2:T06084
          Length = 105

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 103 FVFPFTFINHPSHKRSL 53
           FV P +F+NHPS K  L
Sbjct: 55  FVVPISFLNHPSFKEFL 71


>At4g17680.1 68417.m02641 expressed protein
          Length = 314

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 337 VLGTECRIAQRRMATIVCIVVRHKLV 260
           ++G  CRI +R+ AT++ +  +H ++
Sbjct: 262 LIGPSCRICRRKSATVMALPCQHLIL 287


>At1g21940.1 68414.m02745 hypothetical protein
          Length = 183

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 311 TTKNGHHSLYCGKAQASMTNV 249
           TTKNGH +LYC      M ++
Sbjct: 106 TTKNGHVALYCASELNKMADM 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,674
Number of Sequences: 28952
Number of extensions: 165429
Number of successful extensions: 319
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)