Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0279
         (332 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ01 Cluster: Ferritin isoform 2; n=1; Bombyx mori|Re...    75   3e-13
UniRef50_A5BRA5 Cluster: Putative uncharacterized protein; n=1; ...    33   1.3  
UniRef50_Q9AW08 Cluster: Putative uncharacterized protein; n=1; ...    32   2.2  
UniRef50_A2YZT8 Cluster: Putative uncharacterized protein; n=3; ...    31   3.9  
UniRef50_Q18LF7 Cluster: Helicase/primase complex; n=1; Elephant...    31   6.7  
UniRef50_Q8R5R7 Cluster: Sporulation specific protein; SpoIIGA; ...    31   6.7  
UniRef50_Q9VSG2 Cluster: CG7213-PA; n=2; Drosophila melanogaster...    31   6.7  
UniRef50_A5KKF6 Cluster: Putative uncharacterized protein; n=1; ...    30   8.9  

>UniRef50_Q1HQ01 Cluster: Ferritin isoform 2; n=1; Bombyx mori|Rep:
           Ferritin isoform 2 - Bombyx mori (Silk moth)
          Length = 139

 Score = 74.9 bits (176), Expect = 3e-13
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 229 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTL 330
           MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTL
Sbjct: 1   MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTL 34


>UniRef50_A5BRA5 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1160

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 46  VTLINIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFD 168
           VT++ +++NY LL LC   H +  L  VA    +  GS+ D
Sbjct: 840 VTIVGVEVNYALLELCNAIHEESPLAHVAPEMRLMLGSSTD 880


>UniRef50_Q9AW08 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 729

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 21/60 (35%), Positives = 36/60 (60%)
 Frame = -1

Query: 233 FIFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL*FILIFI 54
           F++++ +L   S  NN  + R+SKV+ L+ L +KAT+NN ++  K   + N+  F   FI
Sbjct: 268 FLYNSFFLNFFSNINNYQL-RISKVIKLNNLIKKATANNYTNSQKLYFRQNKKIFNENFI 326


>UniRef50_A2YZT8 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 410

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 16  AGIRHEAAVIVTLINIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLL-F 192
           AG R +A V   LI++           R   + S ++VA C ++  G + + + +  L  
Sbjct: 184 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSQNAQVSEALRL 243

Query: 193 FREFATK*IASNMKVYALIVAC 258
           FREF  + I  N+  +  IVAC
Sbjct: 244 FREFVGRGIELNVVSWTSIVAC 265


>UniRef50_Q18LF7 Cluster: Helicase/primase complex; n=1; Elephantid
           herpesvirus 1|Rep: Helicase/primase complex - Elephantid
           herpesvirus 1
          Length = 975

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 199 LEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENV 95
           L  +T     C  Y +Y+H +  RLP M+++DEN+
Sbjct: 728 LVNVTVVDKNCFDYGIYSHGKSVRLPMMSKVDENL 762


>UniRef50_Q8R5R7 Cluster: Sporulation specific protein; SpoIIGA;
           n=3; Thermoanaerobacter|Rep: Sporulation specific
           protein; SpoIIGA - Thermoanaerobacter tengcongensis
          Length = 283

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 43  IVTLINIKINYNLLSLCGRFHLDESL-LEVAFCASVCKGSTFDIRQTHLLFFREFATK*I 219
           I+ L N+ INY +LSL  RF    S   ++   A +  G       T   FFREF  K +
Sbjct: 18  ILFLENLLINYVILSLTQRFSRKYSTPFKLLLGAFIGAGYVLIFFLTPYSFFREFLAKFL 77

Query: 220 ASNMKVY 240
            S + +Y
Sbjct: 78  LSLLIIY 84


>UniRef50_Q9VSG2 Cluster: CG7213-PA; n=2; Drosophila
           melanogaster|Rep: CG7213-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 449

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 67  INYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLF 192
           +N   L+L  +  L  ++ +V   +SVC G T+DI+ + L F
Sbjct: 114 VNVKCLNLLLQSELQRAISKVKTASSVCSGRTYDIKYSVLTF 155


>UniRef50_A5KKF6 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus torques ATCC 27756|Rep: Putative
           uncharacterized protein - Ruminococcus torques ATCC
           27756
          Length = 281

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 85  SLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHL 186
           ++CGR  LD+  LE  FC S C G+ ++  Q HL
Sbjct: 243 AVCGRTELDDPCLEFRFC-SKCNGN-YEYCQDHL 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,950,079
Number of Sequences: 1657284
Number of extensions: 5980437
Number of successful extensions: 14648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14647
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)