Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0279
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 27 0.75
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 0.75
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 2.3
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 3.0
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 4.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 4.0
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 24 5.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 24 7.0
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 24 7.0
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 23 9.2
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 23 9.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 23 9.2
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 0.75
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 248 SLPVWLWVCWPRKTHAIRTSTKDA 319
++P+ LW+C P T + TST+DA
Sbjct: 94 NVPITLWICAP-LTAILSTSTRDA 116
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.1 bits (57), Expect = 0.75
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 152 KAVLSTYVKRTCYFFENS 205
KAV YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 2.3
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 70 NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 213
NYN+ C H D L +A CA CK + H EF TK
Sbjct: 16 NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 207 H*INRIKYEGVCSHRCL 257
H I+R++ +GVC RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 207 GEFSKK*QVRLTYVESTAFTHTGAEGD 127
GE + R+ YV AFTH G D
Sbjct: 729 GEIYQHENCRIAYVAQAAFTHLGHHPD 755
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.6 bits (51), Expect = 4.0
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 230 IFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL 75
+ D +YL +S ++ + +VLP+ +K SN+ S + DN +
Sbjct: 901 VVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGDLSNDNSM 952
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 94 GRFHLDESLLEVAF 135
G +H+DE LLEV F
Sbjct: 191 GSYHVDEKLLEVEF 204
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 55 INIKINYNLLSLCGRFHLDESLLEVA 132
+N+K+N N + +++DE LE+A
Sbjct: 1467 VNVKVNRNTREISFIYNVDEHKLEMA 1492
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 116 HCWKSPSAPVCVKAVLSTYVKRTCYFFENS 205
HC P A C A +S+Y+ F+ N+
Sbjct: 236 HCSGHPLAAFCGLATISSYLVLFIVFYHNT 265
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 34 AAVIVTLINIKINYNLLSLCG 96
A IV + +NYNL +LCG
Sbjct: 812 AVEIVDRLAAMLNYNLQALCG 832
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 23.4 bits (48), Expect = 9.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 233 RCMLSSLPVWLWVCWP 280
RC+L S+ W +C+P
Sbjct: 268 RCLLPSVTFWQNICYP 283
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 188 YFFENSPLNKSHQI*RCMLSSLPVWLW 268
YF N P K HQI R + L +++
Sbjct: 23 YFDANLPFKKRHQIVRSIYHGLKYYIY 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,277
Number of Sequences: 5004
Number of extensions: 25268
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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