Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0279
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0069 - 17639386-17641380 31 0.17
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 0.39
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 1.6
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072... 27 2.8
05_04_0310 + 20114415-20117819 27 3.7
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 27 4.9
11_06_0635 + 25704214-25704360,25705198-25705656 26 6.4
06_03_0898 + 25772496-25773501,25774540-25775150 26 6.4
02_02_0643 + 12590928-12592172,12592609-12592698 26 6.4
11_04_0095 + 13429895-13431019 26 8.5
03_05_0189 - 21760833-21761390 26 8.5
01_06_1808 - 40023533-40023966,40024078-40024204 26 8.5
>05_04_0069 - 17639386-17641380
Length = 664
Score = 31.5 bits (68), Expect = 0.17
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 16 AGIRHEAAVIVTLINIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLL-F 192
AG R +A V LI++ R + S ++VA C ++ G + + + + L
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRL 244
Query: 193 FREFATK*IASNMKVYALIVAC 258
FREF + I N+ + IVAC
Sbjct: 245 FREFVGRGIELNVVSWTSIVAC 266
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 201 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 317
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 185 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 274
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>07_03_1362 -
26006159-26006461,26006691-26006841,26006975-26007212,
26007293-26007503,26007631-26007755,26007895-26008023,
26008540-26009326
Length = 647
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 142 WRRRRLPTMTRLDENVRTKTTDCNLF*YLSALR 44
WR++RLPT T L EN ++F LS L+
Sbjct: 293 WRKKRLPTKTPLIENTEDLEDFESIFIDLSTLQ 325
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 213 INRIKYEGVCSHRCLSGSGCAGRGRLML 296
+N+++ E C RCL G G GRG L
Sbjct: 48 LNQLRAEAGCVERCLGGGG-GGRGNCEL 74
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 298 DSMSLPRPAHPEPDRQR*EHTPSYLMRFI*WRILE 194
+S S PRP HPE D E P + R + RILE
Sbjct: 10 ESSSPPRP-HPEADMVNKEKDPEEMKRKLKERILE 43
>11_06_0635 + 25704214-25704360,25705198-25705656
Length = 201
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 94 GRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFA 207
G FH D SLL+ AF A + + FFR+FA
Sbjct: 139 GLFHSDSSLLDDAFTAGYVRRQATGMYAAE--FFRDFA 174
>06_03_0898 + 25772496-25773501,25774540-25775150
Length = 538
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 52 LINIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFA 207
LIN+K N++ R H LL C CK +D+ + ++F +A
Sbjct: 381 LINLKYPKNIIKETLRLHPVAPLLVPKECQESCKILGYDVPKGTIMFVNAWA 432
>02_02_0643 + 12590928-12592172,12592609-12592698
Length = 444
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 283 PRPAHPEPDRQR*EH---TPSYLMRFI*WRILEKITSAFDVCRKYCLYTHWRRRRLPTM 116
PRP PEP + + +L+ + + EK T AFDV + W++ L T+
Sbjct: 251 PRPTMPEPGEVLARYLVESRGHLLMVVRFVSTEKATVAFDVFKLELKPPSWKKLTLDTL 309
>11_04_0095 + 13429895-13431019
Length = 374
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 172 VCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDC 74
V + CL +R+L +TRLD++ R TT C
Sbjct: 329 VLKAACLDFLSCKRKLRQVTRLDDDFRLLTTTC 361
>03_05_0189 - 21760833-21761390
Length = 185
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 52 LINIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLL 189
LIN+K N++ R H SLL C CK +DI + +L
Sbjct: 28 LINLKYPKNIIKETMRLHPLASLLVPRKCQESCKILGYDIPKGTIL 73
>01_06_1808 - 40023533-40023966,40024078-40024204
Length = 186
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 301 SDSMSLPRPAHPEPDRQR*EHTPSYLMR 218
S S +LP PA P P Q+ P++ MR
Sbjct: 140 STSSALPAPAPPPPPSQQQPPLPAFSMR 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,154
Number of Sequences: 37544
Number of extensions: 167500
Number of successful extensions: 472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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