Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0279
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                29   0.71 
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   2.2  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              27   2.9  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             27   3.8  
SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)            27   3.8  
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                27   5.0  
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 26   6.6  
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               26   6.6  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   26   6.6  
SB_38019| Best HMM Match : 7tm_1 (HMM E-Value=1e-12)                   26   8.8  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   26   8.8  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         26   8.8  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 217 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGC 318
           ++S+MK   L++AC ++    E+D C +  D GC
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC 78


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 228 YEGVCSHRCLSGSGCAGRGRLML 296
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 153 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 260
           R + RH ++   +F R+ H  NR++Y+G  ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 205 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 71
           R L+ + SA  VC +YCLY  W R R  ++  +   + T  TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 205 RILEKITSAFDVCRKYCLYTHWRRRR 128
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 205 RILEKITSAFDVCRKYCLYTHWRRRR 128
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)
          Length = 590

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -2

Query: 175 DVCRKYCLYTHWR-----RRRLPTMTRLDENVRTKTTDCNLF 65
           D+    CL T  R     RRRLP   RL +    +T D NLF
Sbjct: 76  DIINDNCLLTLSRANQELRRRLPLKPRLHDRTVARTLDGNLF 117


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 229 MKVYALIVACLALGVLAEEDSCYQNVDQGC 318
           MK   L++AC ++    E+D C +  D GC
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC 29


>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 231 EGVCSHRCLSGSGCAGR 281
           +  C HRC+ G  C GR
Sbjct: 174 QSCCGHRCVFGKSCYGR 190


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 231 EGVCSHRCLSGSGCAGR 281
           +  C HRC+ G  C GR
Sbjct: 96  QSCCGHRCVFGKSCYGR 112


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 205  RILEKITSAFDVCRKYCLYTHWRRRR 128
            R L+ + SA  VC +YCLY  W R R
Sbjct: 965  RQLQALDSA--VCGQYCLYFLWHRVR 988


>SB_38019| Best HMM Match : 7tm_1 (HMM E-Value=1e-12)
          Length = 353

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 113 SSR*KRPHKDNRL*FILIFIS 51
           SS  +RPH+D RL  +LIFIS
Sbjct: 137 SSAIQRPHRDQRL-ILLIFIS 156


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 205  RILEKITSAFDVCRKYCLYTHWRR 134
            R L+ + SA  VC +YCLY  W+R
Sbjct: 1284 RQLQALDSA--VCGQYCLYFLWQR 1305


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 225 KYEGVCSHRCLSG 263
           K++ VCSHRC SG
Sbjct: 316 KFDQVCSHRCPSG 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,985
Number of Sequences: 59808
Number of extensions: 195656
Number of successful extensions: 529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)