Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0279
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    29   0.61 
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        29   0.61 
U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.        29   0.61 
AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical...    27   2.5  
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    27   3.3  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   4.3  
Z77655-4|CAB01135.1|  378|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 150 THTGAEGDFQQ*LV*MKTSAQRQQIVIYFNIYQRYDDSGLVPNSCSPGI 4
           T+ G   DF++ +   + ++Q   I+ Y+N+ Q +     VP SCS  +
Sbjct: 415 TNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAV 463


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 150 THTGAEGDFQQ*LV*MKTSAQRQQIVIYFNIYQRYDDSGLVPNSCSPGI 4
           T+ G   DF++ +   + ++Q   I+ Y+N+ Q +     VP SCS  +
Sbjct: 415 TNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAV 463


>U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.
          Length = 685

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 150 THTGAEGDFQQ*LV*MKTSAQRQQIVIYFNIYQRYDDSGLVPNSCSPGI 4
           T+ G   DF++ +   + ++Q   I+ Y+N+ Q +     VP SCS  +
Sbjct: 415 TNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAV 463


>AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7a protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 175 DVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCNLF*YLSALR*QR-PR-AEFLQPGDP 2
           D+C ++  + H+  + +PT T + E   TK +DC    YL  +R Q  PR  +FL+   P
Sbjct: 194 DIC-EHINHNHYTPK-MPTKTEIPEIFETKFSDCQP--YLFKIRRQAVPRFCDFLRASSP 249


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 220 ASNMKVYALIVACLALGVLAEEDSCY 297
           +SN+  Y  ++ C+AL V A   SCY
Sbjct: 275 SSNLYAYMFLLRCIALDVRAHIVSCY 300


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 43  IVTLINIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFF 195
           I+  I+ KI     SL  R+ ++E L    F        TF IR THLLFF
Sbjct: 206 ILLRIHKKIRIKYYSLSVRYEMEEILQSSKF--------TFIIRFTHLLFF 248


>Z77655-4|CAB01135.1|  378|Caenorhabditis elegans Hypothetical
           protein C56A3.5 protein.
          Length = 378

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 55  INIKINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK*IASNMK 234
           +N ++N   L++       E+   +   A   KGS  D+ Q H     +FATK ++  M 
Sbjct: 254 VNKQLNLGSLAVVAYTPNPETKTAIESVARTLKGSIKDV-QLH-----QFATKGLSDGMA 307

Query: 235 VYALIVA 255
            ++LIVA
Sbjct: 308 NFSLIVA 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,598,328
Number of Sequences: 27780
Number of extensions: 143456
Number of successful extensions: 312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)