Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0279
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50890.1 68414.m05722 expressed protein                             27   4.1  
At2g37880.1 68415.m04650 expressed protein contains Pfam profile...    26   5.5  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    26   7.2  
At4g33530.1 68417.m04765 potassium transporter family protein si...    25   9.5  
At4g17430.1 68417.m02609 expressed protein weak similarity to Ci...    25   9.5  

>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 263 LWVCWPRKTHAIRTSTKDA 319
           +W CW    HA+R    D+
Sbjct: 679 IWTCWSNSVHALRVGDTDS 697


>At2g37880.1 68415.m04650 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 247

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 236 CMLSSLPVWLWVCWPRKT-HAIRTSTKD 316
           C+L S+PVW   C  RK   A+R S  +
Sbjct: 143 CLLRSVPVWTMFCNGRKLGFAVRRSANE 170


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 19  GIRHEAAVIVTLINIKINYNLLSLCGRFH 105
           G + +A+ +V L+ +  NY  +SLC + H
Sbjct: 50  GEKPDASPLVHLLRVSGNYGYVSLCRQLH 78


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 19  GIRHEAAVIVTLINIKINYNLLSLCGRFHLDESLLEVAFCASVC 150
           GI     ++VTLI + I    + +   F +   ++E+ F +SVC
Sbjct: 508 GIMMTTTILVTLIMLLIWQTNIIVVSMFAIVSLIVELVFFSSVC 551


>At4g17430.1 68417.m02609 expressed protein weak similarity to CigA
           protein [Mucor circinelloides] GI:9717020
          Length = 507

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 217 IASNMKVYALIVAC--LALGVLAEEDSCYQNVDQGCRRTL 330
           +A   + Y  +  C  L  GV    D C   VD+ CR T+
Sbjct: 200 LAEQSQAYESLKQCGYLLSGVRGNVDKCLYAVDEDCRTTV 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,095,992
Number of Sequences: 28952
Number of extensions: 132419
Number of successful extensions: 318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)