Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0278
         (513 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1CZP3 Cluster: DNA-binding reponse regulator; n=2; Myx...    33   5.0  
UniRef50_A1UJ96 Cluster: Major facilitator superfamily MFS_1; n=...    33   5.0  
UniRef50_Q4QG05 Cluster: Putative uncharacterized protein; n=3; ...    33   5.0  
UniRef50_A2EYT9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_A6SB40 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_A1AZT5 Cluster: Putative uncharacterized protein; n=1; ...    32   8.8  
UniRef50_A2Z622 Cluster: Putative uncharacterized protein; n=2; ...    32   8.8  

>UniRef50_Q1CZP3 Cluster: DNA-binding reponse regulator; n=2;
           Myxococcales|Rep: DNA-binding reponse regulator -
           Myxococcus xanthus (strain DK 1622)
          Length = 231

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +3

Query: 201 WMDELPARLRLSAHRGSQRSPRGCHWPQPSQSRAA*LLRCKSRQGSGTYPRGLTKH 368
           WM+EL AR+R       +R  R  HW   S    A   R  SR+G+G  P   T+H
Sbjct: 109 WMEELVARIRARLLLQEERPRRVLHWDDVSLDLDA---REASREGTGALP--FTRH 159


>UniRef50_A1UJ96 Cluster: Major facilitator superfamily MFS_1; n=19;
           Mycobacterium|Rep: Major facilitator superfamily MFS_1 -
           Mycobacterium sp. (strain KMS)
          Length = 454

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 242 PGLTEITAWMSLATALTVAGCVTASLQESTGKWYLPARAHK 364
           PG T  T+W  L  A+TVAG V A L   TG W    R  +
Sbjct: 55  PGDTSATSW--LGRAMTVAGLVVAVLAPVTGVWVQAPRRRR 93


>UniRef50_Q4QG05 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 775

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 96  RPGPLVLV-FINALNHASAC-----RSVGRAAVCPRRSLLHWMDELPARLRLSAHRGS 251
           R GP + V F+N  NH + C      + GR AV  R  ++ WM  LPA L LS   GS
Sbjct: 503 RLGPYLRVPFVN--NHDTGCGATTAATAGRDAVALRGGVVRWMPYLPAYLLLSQMGGS 558


>UniRef50_A2EYT9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 262

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 355 GSQNIFCLYNST*KCHHVLIHQVPSVLYHLLYTTYNKISRVVCVNNTF 498
           G+ NI+C YN T +C +     +P V+  +    Y KI++++  NN F
Sbjct: 126 GTLNIYCSYNDTKQCKY-FCKWLPIVVREITEYIYVKITQLLMENNQF 172


>UniRef50_A6SB40 Cluster: Putative uncharacterized protein; n=1;
            Botryotinia fuckeliana B05.10|Rep: Putative
            uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 1240

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 22/66 (33%), Positives = 26/66 (39%)
 Frame = -1

Query: 336  FPVDSCSEAVTQPATVRAVASDIHAVISVSPGAH*AVNGPEARPSSEAMSGVGTPRPDRH 157
            FP+DS  E+  +P   RA      A     P  H + N P   PSS    G   P P R 
Sbjct: 1071 FPIDSEPESPRRPVVHRAAGPS--AADPALPAPHPSTNLPPLPPSSSDSEGQPPPAPPRP 1128

Query: 156  FDTPMR 139
               P R
Sbjct: 1129 PPVPPR 1134


>UniRef50_A1AZT5 Cluster: Putative uncharacterized protein; n=1;
           Paracoccus denitrificans PD1222|Rep: Putative
           uncharacterized protein - Paracoccus denitrificans
           (strain Pd 1222)
          Length = 357

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 167 GRGVPTPLIASLDGRASGPFTA*CAPGLTEITAWMSLATALTVAG 301
           GRG   PLIA++ GR+         PGL EI A+ S   ALT+ G
Sbjct: 225 GRGAAWPLIAAISGRSGVRRIVARRPGLAEIGAFWS---ALTIRG 266


>UniRef50_A2Z622 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 529

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 128 CSEPRIGVSKCRSGRGV-PTPLIASLDGRASGPFTA*CAPGLTEITAWMSLATALTVAGC 304
           C   R  ++ CRS R V P  ++ S D RA+  +T  C+     I+ +   A  + +  C
Sbjct: 138 CCRGRRNITTCRSDRSVAPRDMVCSAD-RATKAWT--CSA--KSISLFEISAREIRINAC 192

Query: 305 VTASLQESTGKWYLPARAHK 364
           +T+    + G ++LP   HK
Sbjct: 193 LTSIALYTMGFYHLPEEFHK 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,492,493
Number of Sequences: 1657284
Number of extensions: 11205138
Number of successful extensions: 29405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29395
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)