Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0278
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    27   1.2  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   3.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   5.0  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   6.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.8  

>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 213 ARPSSEAMSGVGTPRPDRHFDTPMRGSEH**TQAR 109
           A+   EAM+    P  DRH   P+ GSE+  + AR
Sbjct: 8   AKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMAR 42


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 391 TLNYISRKCFVSPRG*VPLPCRLLQRSSHAARDCEGCGQ 275
           T  ++ R C  SP       C    R  H ARDC   GQ
Sbjct: 65  TAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQ 103


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 364 NIFCLYNST*KCHHVLIHQVPSVLYHLLYTTYN 462
           NIF LY    +C H+++  +   LY L+ T  N
Sbjct: 98  NIFDLYIDQFRCLHIVMEFLDCNLYQLISTRKN 130


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 238 ALSRKRAGSSSIQ*SNERRGHTAARPTLRHADAWFRALINTSTSGPGRHEIVIISIRNEH 59
           AL +KRA        N R+     R +  H+    R  +N S+     H++ ++S   E 
Sbjct: 21  ALEKKRAKE------NSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQVPVLSNFEEW 74

Query: 58  IKLPT 44
           IKL T
Sbjct: 75  IKLAT 79


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 235 LSRKRAGS-SSIQ*SNERRGHTAARPTLRHADAWFRALINTSTSGP 101
           LS +  GS SS+  +   R H+  RP L + D + R+  + S S P
Sbjct: 195 LSDETEGSESSVSFNRLSRNHSPTRPLLGNRDLFRRSSNHVSASMP 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,384
Number of Sequences: 5004
Number of extensions: 41461
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)