Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0278
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0679 - 31127510-31127722,31129691-31129717,31129877-311302... 29 1.7
02_03_0087 + 15073687-15074179,15074490-15074509 29 2.9
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 3.8
10_08_0650 - 19591898-19593148 28 3.8
02_05_0660 + 30687366-30687370,30687823-30688765,30688820-306889... 28 5.1
01_05_0330 - 21053162-21053557,21053682-21054083 28 5.1
01_01_0877 - 6878905-6879600,6880696-6880968 28 5.1
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594... 27 6.7
07_01_0936 + 7932772-7933324,7933550-7934414,7934714-7934786 27 8.8
04_01_0304 + 4136261-4136294,4136360-4136436,4136555-4136634,413... 27 8.8
>01_06_0679 -
31127510-31127722,31129691-31129717,31129877-31130245,
31130340-31130396
Length = 221
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 48 GNLICSLRIDIITISCRPGPLVLVFINALNHASACRSVGRAA-VCPRRSLLHWMDELPAR 224
G L+C L + ++ R P + V +HAS C R + P SL+ M ++
Sbjct: 58 GRLVCGLCAEAVSERRRREPALTVGEAVESHASLCDRFNRTVRLNPTLSLVRSMRDIART 117
Query: 225 LRLSAHRGSQ 254
LS HR ++
Sbjct: 118 NCLSRHRSAR 127
>02_03_0087 + 15073687-15074179,15074490-15074509
Length = 170
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 241 CALSRKRAG-SSSIQ*SNERRGHTAARPTLRHADAWFRAL 125
C R + G S + S+ RGH A RP RH A AL
Sbjct: 8 CGDDRAKGGVMSRLAESSRSRGHVAGRPVRRHLGARLSAL 47
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 451 YTVSDTAQKALGE*--ERDDTFTLNYISRKCFVSPRG*VP 338
++V D A++A+G +R +TL +S +C VS R P
Sbjct: 186 FSVDDKAEQAVGSTLSDRKSNYTLESVSERCIVSGRSSSP 225
>10_08_0650 - 19591898-19593148
Length = 416
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 117 VFINALNHASACRSVGRAAVCPRRSLLHWMDELPARLRLSAHRGSQRSPRGCHW 278
+F++ +HA A + G A+ R + AR SAHRG CHW
Sbjct: 343 LFVSRRSHAFALPASGAASPASSRIASTTWSDYAARSS-SAHRGRLAVSSPCHW 395
>02_05_0660 +
30687366-30687370,30687823-30688765,30688820-30688971,
30689301-30689316,30690410-30690508,30690598-30690671,
30690827-30691076
Length = 512
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 66 LRIDIITISCRPGPLVLVFINALNH 140
+R D+I C PG ++VF LNH
Sbjct: 266 VRDDLINAMCLPGGKIVVFTGLLNH 290
>01_05_0330 - 21053162-21053557,21053682-21054083
Length = 265
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 202 GWTSFRPVYGLVRTGAHRDHRVDVTGHSPHSRGLRDCFAARVD 330
GW +R V L+R HR H D+ +R LRD A D
Sbjct: 28 GWCWYR-VATLLRAAGHRVHAPDLAASGADARRLRDDDAPTFD 69
>01_01_0877 - 6878905-6879600,6880696-6880968
Length = 322
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 262 RVDVTGHSPHSRGLRDCFAARVDREVVP 345
R+ G+ P RG+ DCF V E +P
Sbjct: 250 RLQAQGYPPRYRGIADCFRRSVREEGLP 277
>04_04_0014 +
22158441-22158669,22158782-22158878,22159264-22159461,
22159907-22160141,22160383-22160710,22160798-22161068,
22161169-22161424,22161508-22161964,22162096-22162286
Length = 753
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 60 CSLRIDIITISCRP-GPLVLVF 122
C ++DII+ SCRP G + LVF
Sbjct: 337 CRAKVDIISASCRPCGTVELVF 358
>07_01_0936 + 7932772-7933324,7933550-7934414,7934714-7934786
Length = 496
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 102 GPLVLVFINALNHASACRSVGRAAVCPRRSLLHWMD 209
G +++ + L+ S + G +CP RS + W+D
Sbjct: 255 GVAIVLAVGPLHKLSPMNAGGSLHLCPDRSCIEWLD 290
>04_01_0304 +
4136261-4136294,4136360-4136436,4136555-4136634,
4137244-4137310,4137975-4138166,4138763-4139059
Length = 248
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 157 VSVGPRCAHAAHCFTGWTSFRP 222
+ PR A HCFT W + P
Sbjct: 223 IRTAPRAAALRHCFTPWEALAP 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,661,231
Number of Sequences: 37544
Number of extensions: 331060
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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