Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0278
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31003| Best HMM Match : Antimicrobial11 (HMM E-Value=8) 29 1.7
SB_50424| Best HMM Match : DUF581 (HMM E-Value=5.1) 29 2.2
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 29 3.0
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20014| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18) 29 3.0
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11) 29 3.0
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 28 3.9
SB_15237| Best HMM Match : NHL (HMM E-Value=0) 27 6.9
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037) 27 9.1
>SB_31003| Best HMM Match : Antimicrobial11 (HMM E-Value=8)
Length = 397
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +1
Query: 142 HRRVEVSVGPRCAHAAHCFTGWTSFRPVYGLVRTGAHRDHRVDVTGHSPHSRGLRDCFAA 321
HRRV ++HC GW S +P +D+ HSR D A+
Sbjct: 298 HRRVSFDPTDTIGLSSHCLAGWESSKPAV------VPPQSSLDLKASLHHSRATLD--AS 349
Query: 322 RVDREVVPTRAGSQNI 369
R+ R P++ +Q +
Sbjct: 350 RIGRFSPPSQHSTQEL 365
>SB_50424| Best HMM Match : DUF581 (HMM E-Value=5.1)
Length = 496
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 149 VSKC--RSGRGVPTPLIASLDGRASGPFTA*CAPGLTEITAWMSLATALTVAGCVTASLQ 322
+SKC + GRG + +I + S APG+++ L V GC T S
Sbjct: 381 LSKCYLKKGRGEKSKIIELSE--VSDKVGRRTAPGVSKEKVLQGLIGLHAVTGCDTVSTF 438
Query: 323 ESTGKW 340
S GKW
Sbjct: 439 SSKGKW 444
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -1
Query: 318 SEAVTQPATVRAVASDIHAVISVSPGAH*AVNGPEARPSSEAMSGVGTPRPDRHFDTPMR 139
SE +Q TVRA S++H S SP + P++ P ++ + V P D HF +P
Sbjct: 469 SEPHSQSPTVRAPQSELH---SQSP----TLRAPQSDPHFQSPT-VRAPHSDPHFQSPTS 520
Query: 138 GS 133
S
Sbjct: 521 NS 522
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 132 LNHASACRSVGRAAVCPRRSLLHWMDELPARLRLSAHRGSQR 257
L H+SACR G A + + L W + R + H ++R
Sbjct: 267 LVHSSACRGYGHAGIGIKSGLYEWKGVVSKREVMLVHSSARR 308
>SB_20014| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
Length = 184
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 337 LPCRLLQRSSHAARDCEGCGQ*HPRGDLCEPRCALSRKRAGSSSIQ 200
LPC ++ SH + C G H G C C+ + AGS+S Q
Sbjct: 99 LPCVSIEAPSHGSMKCSG----HVTGANCSFYCSAGYEIAGSASRQ 140
>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
Length = 905
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 324 SCSEAVTQPATVRAVASDIHAVISVSPGAH*AVNGPEARPSSEAMSGVG 178
S +EA P+ AVAS VSP A AV P A ++ + S G
Sbjct: 210 SATEAFASPSATEAVASPSATGAVVSPSAIEAVVSPTATEAATSPSATG 258
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 216 PARLRLSAHRGSQRSPRGCHWPQPSQ 293
PA R S H GS SPR P+PSQ
Sbjct: 844 PASARSSVHAGSPLSPRPPTSPKPSQ 869
>SB_15237| Best HMM Match : NHL (HMM E-Value=0)
Length = 997
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 250 HRDHRVDVTGHSPHSRGLRDCFAARVDREVVPTRAGSQNIFCLYNST*KCHHVLIHQVPS 429
HR+HR T P +++ V++ R G Q I CL N + + QV
Sbjct: 422 HRNHRFHPTSTDPILHRIKEEIKRCVEKTKTRLREGDQEIDCL-NQEASMGELRLQQVQK 480
Query: 430 VLYHLLYTTYNKI 468
++ + + T + I
Sbjct: 481 MMQNFVNKTIDLI 493
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 237 AHRGSQRSPRGCHWPQPSQS-RAA*LLRCKSRQGSGTYPRGLT 362
+HR + RSPR H P S R R RQ G Y R +T
Sbjct: 509 SHRSTSRSPRRRHSPSVSPPYRRRSRSRSPQRQRLGKYGRDIT 551
>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
Length = 955
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 204 MDELPARLRLSAHRGSQRSPRG 269
+DE P+R+RL A G++ SPRG
Sbjct: 231 VDEDPSRVRLLAWIGNRTSPRG 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,341
Number of Sequences: 59808
Number of extensions: 371844
Number of successful extensions: 973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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