Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0278
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024821-1|AAK68901.2|  456|Caenorhabditis elegans Hypothetical ...    30   1.1  
U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL008867-2|CAE17750.1|  763|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC024821-1|AAK68901.2|  456|Caenorhabditis elegans Hypothetical
           protein Y55B1AR.2a protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +3

Query: 126 NALNHASACRSVGRAAVCPRRSL--LHWMDEL--PARLRLSAHRGSQRSPRGCHWPQPSQ 293
           +A N  S        ++C  +S+   H + ++  P   R+   R    +PRG + P+   
Sbjct: 364 DANNRQSTSVHSSLGSICSSKSIDGAHALSKMGTPTASRIPTPRSRLPTPRGSNLPKRVH 423

Query: 294 SRAA*LLRCKSRQGSGTYPRGLTKHF 371
           S AA +    S+  S T   G  +HF
Sbjct: 424 SVAAAVRLATSKPESSTSTNGTARHF 449


>U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical
           protein F09C12.8 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 394 KCHHVL--IHQVPSVLYHLLYTTYN 462
           KC++ +   HQVPSV Y  L T YN
Sbjct: 275 KCNYWVPAAHQVPSVTYEFLTTKYN 299


>AL008867-2|CAE17750.1|  763|Caenorhabditis elegans Hypothetical
           protein C46E1.3 protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 189 SLLHWMDELPARLRLSAHRGSQRSPRGCHWPQPS 290
           SL  +++E P  L  S H GS   PR    P PS
Sbjct: 58  SLRSFIEETPILLGSSEHSGSSSPPRSSPPPPPS 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,928,563
Number of Sequences: 27780
Number of extensions: 257995
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)