Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0278
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   7.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 180 PRRSLLHWMDELP-ARLRLSAHRGS 251
           P+++ L WM E+P   L  S + GS
Sbjct: 351 PKKTRLRWMMEIPNVTLPTSTYSGS 375


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 212 ASGPFTA*CAPGLTEITAWMSLATALTVAGCVTASLQEST 331
           +S P  + C PG     A +S   +++     TAS   ST
Sbjct: 148 SSAPTGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSST 187


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 406  VLIHQVPSVLYHLLYTTYN 462
            V++  VP+  YHL  T +N
Sbjct: 1520 VVLDLVPATWYHLRVTAHN 1538


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 317 LQESTGKWYLPA 352
           L +  GKWYLP+
Sbjct: 233 LCKGDGKWYLPS 244


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 512 LRKALNVLFTHTTRLILL*VVYS 444
           +++  +++F H+  LIL+  +YS
Sbjct: 1   MKENFSIMFIHSIFLILIIFIYS 23


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 512 LRKALNVLFTHTTRLILL*VVYS 444
           +++  +++F H+  LIL+  +YS
Sbjct: 1   MKENFSIMFIHSIFLILIIFIYS 23


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 42  SVGNLICSLRIDIITISCRPGPLVLVFIN 128
           S G ++C L +    +SC    L L  I+
Sbjct: 108 SFGTIMCDLWVSFDVLSCTASILNLCMIS 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,571
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)