Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0278
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 29 1.8
At4g30150.1 68417.m04287 expressed protein 28 4.2
At1g53570.2 68414.m06081 mitogen-activated protein kinase kinase... 28 4.2
At1g53570.1 68414.m06080 mitogen-activated protein kinase kinase... 28 4.2
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 5.6
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 5.6
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 27 7.4
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 27 7.4
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 27 9.8
At4g09130.1 68417.m01507 zinc finger (C3HC4-type RING finger) fa... 27 9.8
At4g01540.1 68417.m00200 no apical meristem (NAM) family protein... 27 9.8
At2g21380.1 68415.m02544 kinesin motor protein-related 27 9.8
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 126 NALNHASACRSVGRAA-----VCPRRSLLHWMDELPARLRLSAH 242
N + S C+ GR A VCP + W DEL ++ L AH
Sbjct: 617 NKVVEDSLCKMRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAH 660
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 183 RRSLLHWMDELPARLRLS 236
R LHW+DEL RLR+S
Sbjct: 1636 RSHRLHWLDELKQRLRMS 1653
>At1g53570.2 68414.m06081 mitogen-activated protein kinase kinase
kinase (MAPKKK), putative (MAP3Ka) identical to MEK
kinase (MAP3Ka)[Arabidopsis thaliana]
gi|4204912|gb|AAD10848
Length = 608
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = -3
Query: 247 PRCALSRKRAGSSSI-----Q*SNERRGHTAARPTLRHADAWFRALINTSTSG 104
PRC SR+ AG+SS S E++GH RP L + ++ STSG
Sbjct: 46 PRC--SREFAGASSAFSGFDSDSTEKKGHPLPRPLLSPVSIHHQDHVSGSTSG 96
>At1g53570.1 68414.m06080 mitogen-activated protein kinase kinase
kinase (MAPKKK), putative (MAP3Ka) identical to MEK
kinase (MAP3Ka)[Arabidopsis thaliana]
gi|4204912|gb|AAD10848
Length = 609
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = -3
Query: 247 PRCALSRKRAGSSSI-----Q*SNERRGHTAARPTLRHADAWFRALINTSTSG 104
PRC SR+ AG+SS S E++GH RP L + ++ STSG
Sbjct: 46 PRC--SREFAGASSAFSGFDSDSTEKKGHPLPRPLLSPVSIHHQDHVSGSTSG 96
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = -1
Query: 333 PVDSCSEAVTQPATVRAVASDIHAVISVSPGAH*AVNGPEARPSSEAMSGVGTPRPDRHF 154
PV S A PAT VAS V S P V P P + + V P P
Sbjct: 73 PVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKP 132
Query: 153 DTP 145
D+P
Sbjct: 133 DSP 135
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = -1
Query: 333 PVDSCSEAVTQPATVRAVASDIHAVISVSPGAH*AVNGPEARPSSEAMSGVGTPRPDRHF 154
PV S A PAT VAS V S P V P P + + V P P
Sbjct: 73 PVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKP 132
Query: 153 DTP 145
D+P
Sbjct: 133 DSP 135
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -1
Query: 264 AVISVSPGAH*AVNGPEARPSSEAMSGVGTPRPDRHFDTPMRGSEH**TQARAAPADMRL 85
A SVS H +GP A S ++ + R F P+ SE + R A AD R
Sbjct: 365 AADSVSISGHITYSGPIAYSGSLSVRSDASTTSGRSFAFPILQSEWNSSPVRMAKADKRR 424
Query: 84 *LYQFVMSILSCRHS 40
+ ++L CR S
Sbjct: 425 QKGGWRHTLLCCRFS 439
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -1
Query: 264 AVISVSPGAH*AVNGPEARPSSEAMSGVGTPRPDRHFDTPMRGSEH**TQARAAPADMRL 85
A SVS H +GP A S ++ + R F P+ SE + R A AD R
Sbjct: 365 AADSVSISGHITYSGPIAYSGSLSVRSDASTTSGRSFAFPILQSEWNSSPVRMAKADKRR 424
Query: 84 *LYQFVMSILSCRHS 40
+ ++L CR S
Sbjct: 425 QKGGWRHTLLCCRFS 439
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 385 NYISRKCFVSPRG*VPLPCR---LLQRSSHAARDCEGC 281
++I + CF SP + LPCR L + S A +C C
Sbjct: 1005 SHICKVCFESPTAAILLPCRHFCLCKSCSLACSECPIC 1042
>At4g09130.1 68417.m01507 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 357
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 265 RGDLCEPRCALSRKRAGSSSIQ*SNERRGHTAARPTLRHA 146
R + PR SR+ S S+ NER G + R TLR A
Sbjct: 272 RSHIALPRARSSRQGYRSGSV--GNERTGFSQGRQTLRRA 309
>At4g01540.1 68417.m00200 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 423
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 151 HADAWFRALINTSTSGPGRHEIVIISIRNEHIKLPTLTG 35
+ D + A + P HE+V+ RN+H+ +TG
Sbjct: 297 YGDGYLNAFSGYNEGNPPDHELVMQENRNDHMPRKPVTG 335
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 385 NYISRKCFVSPRG*VPLPCR---LLQRSSHAARDCEGC 281
++I + CF SP + LPCR L + S A +C C
Sbjct: 1008 SHICKVCFESPTATILLPCRHFCLCKSCSLACSECPIC 1045
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,107,247
Number of Sequences: 28952
Number of extensions: 229284
Number of successful extensions: 538
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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