Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0277
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    73   4e-14
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    29   0.68 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   1.2  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    25   8.3  

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 40/133 (30%), Positives = 70/133 (52%)
 Frame = +2

Query: 191 KDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKETRPESINHXXXXXXX 370
           K + +S ++  CA++ + L  PIV+C LG+LY+K+S+L+ LLD+ + P+S +H       
Sbjct: 29  KRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPSH------- 81

Query: 371 XXXXXXXXPAYVPTDHTDGTFDNGSAPYICPISGLEMTGKFRFVFLWSCGCVLAERALKE 550
                      V  D      D+G   ++CPI+   M+  ++F ++  CG V    ALK+
Sbjct: 82  IKSLKDVVQLQVELD------DSGKVLWLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQ 135

Query: 551 VRQNLCHMCQQPF 589
             + +C  C Q +
Sbjct: 136 FGEKMCFQCNQVY 148



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 120 MGCDGGTIPRRDELVRM--KKKPEQIKMLKEVSS 215
           MG DGG++P R+ELV+   K  P  I   + V S
Sbjct: 1   MGNDGGSLPTRNELVKEPGKVPPLDIDFKRSVKS 34


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 440 GSAPYICPISGLEMTGKFRFVFLWSCGCV 526
           GSAPYI P    E     R V +W+CG +
Sbjct: 522 GSAPYIAPEEYTESEFDPRAVDVWACGVI 550


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 515 CGCVLAERALKEVRQN----LCHMCQQPF 589
           CG  L+E    + R+N    LCH C+QPF
Sbjct: 898 CGDCLSEHIQYQKRRNIIPPLCHTCRQPF 926


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 167 NEKEARTDKDAERSFKWRN-CALSQQILQEPIVACSLGRLYSKSSVLEAL 313
           N +E   D+    S  + N C L+ Q +  PI++ +    Y K ++L  L
Sbjct: 159 NTEEQEADEVMVYSATFDNRCPLTLQPIVHPILSTACNHFYEKDAILSLL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,935
Number of Sequences: 5004
Number of extensions: 49916
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)