Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0277
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0585 - 4200230-4201282                                           75   3e-14
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800...    29   2.8  
05_05_0097 - 22356209-22357227,22357314-22357445,22357537-223577...    29   3.7  
07_01_0005 + 41687-43405                                               28   6.5  
04_04_0093 + 22767103-22767295,22767557-22767596,22767888-227679...    27   8.5  

>06_01_0585 - 4200230-4201282
          Length = 350

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 44/140 (31%), Positives = 72/140 (51%)
 Frame = +2

Query: 170 EKEARTDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKETRPESINH 349
           +K  + D +  R  ++  CALS + L  P VA  LG L++K +++EALL K   P++++H
Sbjct: 106 KKPDKADPNEARLSRFTCCALSGEPLAAPAVADRLGNLFNKEALVEALLHKRL-PKALSH 164

Query: 350 XXXXXXXXXXXXXXXPAYVPTDHTDGTFDNGSAPYICPISGLEMTGKFRFVFLWSCGCVL 529
                          P        D         + CP++GL+  GK++F+ L  CG VL
Sbjct: 165 IRGLKDMIPIHLHPKP--------DADAAGEEVRFQCPVTGLDFNGKYQFLALRKCGHVL 216

Query: 530 AERALKEVRQNLCHMCQQPF 589
           + +ALKEV+ + C +C + F
Sbjct: 217 SVKALKEVKTSACLVCHKEF 236


>11_06_0234 +
           21574380-21575197,21576131-21576190,21578320-21580053,
           21581859-21582006
          Length = 919

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 583 LLTHMAQVLSDFLQCPLSKHTATAPEKNKTKFSSHLQATNRADVRSTPIIKCPISMV 413
           +L  +  V S   Q   ++  A     N+ KF +    T  A +RS   I+CPISM+
Sbjct: 530 ILDRLYDVHSSSSQSSTARRVAWHKSLNQDKFDN--LTTGMAQLRSLNAIECPISMI 584


>05_05_0097 -
           22356209-22357227,22357314-22357445,22357537-22357781,
           22357870-22358015
          Length = 513

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 447 ALPLSNVPSVWSVGTYAGFLTSFRSLISFRF 355
           +LPL ++P+    G  A F  SFRSL S ++
Sbjct: 288 SLPLPSLPAYNDTGAVANFSASFRSLASAQY 318


>07_01_0005 + 41687-43405
          Length = 572

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 398 AYVPTDHTDGTFDNGSAPYICPISGL-EMTGKFRFVFLWSCGCVLA 532
           A V T  TD   D GS   +CP++ + E+    R + +W+ G V++
Sbjct: 296 AAVVTPTTDKDDDTGSRWRLCPVTQVEELKAVVRLLPVWASGIVMS 341


>04_04_0093 +
           22767103-22767295,22767557-22767596,22767888-22767915,
           22768134-22768189,22768300-22768386,22768468-22768564
          Length = 166

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 550 FLQCPLSKHTATAPEKNKTK 491
           +LQC L KH   APE + TK
Sbjct: 51  YLQCDLFKHLGKAPESHLTK 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,687,855
Number of Sequences: 37544
Number of extensions: 297335
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)