Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0277
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                75   3e-14
SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_56537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)                      28   6.5  

>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
 Frame = +2

Query: 161 RSNEKEARTDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKETRPES 340
           R  +   + +K+ E + KW +CA+SQ+ L  PIV+C LG LY+K  +LE LLD+ +    
Sbjct: 16  RMKKAPEKVEKNYELNAKWFHCAISQEQLHSPIVSCELGNLYNKEKLLEFLLDRSSATSD 75

Query: 341 I-NHXXXXXXXXXXXXXXXPAY--VPTDHTDGTFDNGSAPYICPISGLEMTGK 490
           + NH               PA+     +   G  D  ++ YICP+ G+EM G+
Sbjct: 76  VANHIRNLKDTKQLNLTVNPAFEQKTKEQAGGYLDFQASQYICPVVGIEMNGR 128



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +3

Query: 120 MGCDGGTIPRRDELVRMKKKPEQIKMLKEVSS 215
           MGCDGGTIP RDELVRMKK PE+++   E+++
Sbjct: 1   MGCDGGTIPTRDELVRMKKAPEKVEKNYELNA 32


>SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +2

Query: 140 NSSTR*ARSNEKEARTDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLD 319
           N  T+ +    ++ R  KD+ + F    C+L+ Q  +EP++    G LY K ++LE +L 
Sbjct: 20  NKDTKTSGYGSQKVRLGKDSVKDFDC--CSLTLQPCREPVITPD-GFLYDKEAILECILH 76

Query: 320 KET 328
           ++T
Sbjct: 77  QKT 79


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 131 WRYNSSTR*ARSN-EKEARTDKDAERSFKWRN 223
           WR   S    RS  EKE  T+K+ E+  KWR+
Sbjct: 75  WRREGSGDRERSGGEKEVETEKEVEKRRKWRH 106



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 131 WRYNSSTR*ARSN-EKEARTDKDAERSFKWR 220
           WR   S    RS  EKE  T+K+ E S KWR
Sbjct: 128 WRREGSGDRERSGGEKEVETEKEVEGSRKWR 158



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 131 WRYNSSTR*ARSN-EKEARTDKDAERSFKWR 220
           WR   S    RS  EKE  T+K+ E   KWR
Sbjct: 157 WRREGSGDRERSGGEKEVETEKEVEERRKWR 187


>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = -1

Query: 161 ELIASRNCTAITTHFVKNMCFFTISLSKTKPTLCYFCLEFLLRYIKSYIVL 9
           +++   +   +T   V ++  F +S S   P++ YFC+   L    SY+++
Sbjct: 354 KMVMRHSGMTVTMTTVTDLVAFAVSTSTAFPSIRYFCIYAALSVTLSYLMI 404


>SB_56537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 491 FRFVFLWSCGCVLAERALKEVRQN 562
           F F+FL  C C++ +RA K  + N
Sbjct: 15  FLFIFLSLCECIVVDRACKHAKLN 38


>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 227 HNYAT*NFFQHLYLFWLLFHSNELIASRNCTAITTHFVKNMCFFTISLSKTKP 69
           H  A  +  + L LF L+F +   +     TAI T+ +   C F +S+   KP
Sbjct: 524 HPEAEKSLKESLRLFELVFMNLGSLEKLKITAIETYIITYRCLFHVSIILDKP 576


>SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)
          Length = 326

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 539 PSQQAHSHSSREKQNEIFQSSPSH**GRCKEHSHYQMSH 423
           PS+ + S SSR +    +Q  P     R +E S YQ+SH
Sbjct: 197 PSRASSSSSSRSEPGHEYQDEPDQAESRAQE-SSYQVSH 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,081
Number of Sequences: 59808
Number of extensions: 372227
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)